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Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96
- Source :
- Antimicrobial agents and chemotherapy. 57(8)
- Publication Year :
- 2013
-
Abstract
- Pseudomonas aeruginosa 96 (PA96) was isolated during a multicenter surveillance study in Guangzhou, China, in 2000. Whole-genome sequencing of this outbreak strain facilitated analysis of its IncP-2 carbapenem-resistant plasmid, pOZ176. The plasmid had a length of 500,839 bp and an average percent G+C content of 57%. Of the 618 predicted open reading frames, 65% encode hypothetical proteins. The pOZ176 backbone is not closely related to any plasmids thus far sequenced, but some similarity to pQBR103 of Pseudomonas fluorescens SBW25 was observed. Two multiresistant class 1 integrons and several insertion sequences were identified. The bla IMP-9 -carrying integron contained aacA4 → bla IMP-9 → aacA4 , flanked upstream by Tn 21 tnpMRA and downstream by a complete tni operon of Tn 402 and a mer module, named Tn 6016 . The second integron carried aacA4 → catB8a → bla OXA-10 and was flanked by Tn 1403 -like tnpRA and a sul1 -type 3′ conserved sequence (3′-CS), named Tn 6217 . Other features include three resistance genes similar to those of Tn 5 , a tellurite resistance operon, and two pil operons. The replication and maintenance systems exhibit similarity to a genomic island of Ralstonia solanacearum GM1000. Codon usage analysis suggests the recent acquisition of bla IMP-9 . The origins of the integrons on pOZ176 indicated separate horizontal gene transfer events driven by antibiotic selection. The novel mosaic structure of pOZ176 suggests that it is derived from environmental bacteria.
- Subjects :
- Genomic Islands
Operon
Microbial Sensitivity Tests
Biology
Integron
beta-Lactamases
Conserved sequence
Microbiology
Evolution, Molecular
Complete sequence
Plasmid
Bacterial Proteins
Mechanisms of Resistance
Genomic island
Drug Resistance, Multiple, Bacterial
Humans
Pharmacology (medical)
Pseudomonas Infections
Insertion sequence
Antibacterial agent
Pharmacology
Genetics
Base Composition
Base Sequence
Sputum
Infectious Diseases
Carbapenems
Multigene Family
Pseudomonas aeruginosa
biology.protein
DNA Transposable Elements
bacteria
Genome, Bacterial
Plasmids
Subjects
Details
- ISSN :
- 10986596
- Volume :
- 57
- Issue :
- 8
- Database :
- OpenAIRE
- Journal :
- Antimicrobial agents and chemotherapy
- Accession number :
- edsair.doi.dedup.....fc72101e47e8b83330b9af284b533d03