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Identification prognosis-associated immune genes in colon adenocarcinoma
- Source :
- Bioscience Reports
- Publication Year :
- 2020
- Publisher :
- Portland Press Ltd., 2020.
-
Abstract
- Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene expression data of COAD were downloaded from The Cancer Genome Atlas (TCGA), screening and analyzing differentially expressed IGs by bioinformatics. Core genes were screened by univariate and multivariate Cox regression analyses. Survival analysis was appraised by the Kaplan–Meier method and the log-rank test. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis (GSEA) were used to identify IGs’ relevant signal pathways. We predicted the overall survival (OS) by nomogram. Finally, a prognosis model was conducted based on 12 IGs (SLC10A2, CXCL3, NOX4, FABP4, ADIPOQ, IGKV1-33, IGLV6-57, INHBA, UCN, VIP, NGFR, and TRDC). The risk score was an independent prognostic factor, and a nomogram could accurately predict the OS of individual COAD patients. These results were validated in GSE39582, GSE12945, and GSE103479 cohorts. Functional enrichment analysis demonstrated that these IGs are mainly enriched in hormone secretion, hormone transport, lipid transport, cytokine–cytokine receptor interaction, and peroxisome proliferators-activated receptor signaling pathway. In summary, the risk score is an independent prognostic biomarker. We also excavated several IGs related to COAD’s survival and maybe potential biomarkers for COAD diagnosis and treatment.
- Subjects :
- Male
0301 basic medicine
Oncology
Immunology & Inflammation
Biochemistry
0302 clinical medicine
Risk Factors
Bioinformatic analysis
Gene expression
Tumor Microenvironment
Gene Regulatory Networks
Protein Interaction Maps
Colon adenocarcinoma
Research Articles
Cancer
Middle Aged
Prognosis
Gene Expression Regulation, Neoplastic
Phenotype
Immune cell infiltration
030220 oncology & carcinogenesis
Colonic Neoplasms
Female
Signal Transduction
medicine.medical_specialty
Bioinformatics
Biophysics
Adenocarcinoma
Biology
Risk Assessment
03 medical and health sciences
Predictive Value of Tests
tumor microenvironments
Internal medicine
Biomarkers, Tumor
medicine
Humans
Genetic Predisposition to Disease
Hormone transport
KEGG
Molecular Biology
Gene
Survival analysis
Aged
Tumor microenvironment
Gene Expression & Regulation
Proportional hazards model
Gene Expression Profiling
Reproducibility of Results
Cell Biology
TCGA
Nomogram
Immune gene
Nomograms
030104 developmental biology
Transcriptome
Subjects
Details
- ISSN :
- 15734935 and 01448463
- Volume :
- 40
- Database :
- OpenAIRE
- Journal :
- Bioscience Reports
- Accession number :
- edsair.doi.dedup.....fbeea86e1e1ae28a441f8f378ac3f099
- Full Text :
- https://doi.org/10.1042/bsr20201734