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The Absorption Spectrum of Guanine Based Radicals: a Comparative Computational Analysis
- Source :
- Martínez Fernández, L, Cerezo, J, Asha, H, Santoro, F, Coriani, S & Improta, R 2019, ' The absorption spectrum of guanine based radicals: a comparative computational analysis ', ChemPhotoChem, vol. 3, no. 9, pp. 846-855 . https://doi.org/10.1002/cptc.201900107, ChemPhotoChem
- Publication Year :
- 2019
- Publisher :
- Wiley, 2019.
-
Abstract
- The excited states of the three radical derivatives of guanine, i.e. guanine cation (G+) and its two main deprotonated derivatives (G-H1 and G-H2) have been characterized in the Franck-Condon region by TD-DFT, using different functionals, CASPT2, and EOM-EE-CCSD calculations. In the gas phase, all the methods provide a similar description of the main spectral features, the pictures provided by TD-DFT, with long range corrected functionals, and EOM-EE-CCSD being very close. Solvent effects are then taken into account by a mixed discrete-continuum approach, including five water molecules of the first solvation shell and the Polarizable Continuum Model (PCM). The vibronic absorption line-width has finally been simulated at the TD-M052X level by a time dependent method within the harmonic approximation. The resulting absorption spectra are in good agreement with their experimental counterparts, providing useful indications on the use of PCM/TD-DFT based approaches to interpret the spectra of guanine based radicals within DNA.
- Subjects :
- Materials science
Computational photochemistry
010304 chemical physics
Absorption spectroscopy
Guanine
Radical
Organic Chemistry
DNA
010402 general chemistry
Ab inito calculations
01 natural sciences
Quantum chemistry
0104 chemical sciences
Analytical Chemistry
Quantum chemisty
chemistry.chemical_compound
Organic radicals
chemistry
Ab initio quantum chemistry methods
Computational chemistry
0103 physical sciences
Computational analysis
Physical and Theoretical Chemistry
Solvent effects
Subjects
Details
- ISSN :
- 23670932
- Volume :
- 3
- Database :
- OpenAIRE
- Journal :
- ChemPhotoChem
- Accession number :
- edsair.doi.dedup.....faf118da64ecf85d2fce8c6e70ebbe61