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DisProt 7.0 : a major update of the database of disordered proteins

Authors :
Edoardo Salladini
Eva Schad
Antoine Schramm
Fiorella Tonello
Francesco Tabaro
A. Keith Dunker
Mauricio Macossay-Castillo
Sandra Macedo-Ribeiro
Per Warholm
Norman E. Davey
Maria Cristina Aspromonte
Jordi Pujols
Emanuela Leonardi
Beáta Szabó
Marco Necci
Konstantinos D. Tsirigos
Ivan Mičetić
Salvador Ventura
Wim F. Vranken
Giovanni Minervini
Radoslav Davidovic
Federica Quaglia
Attila Meszaros
Vladimir N. Uversky
Agnes Tantos
Lajos Kalmar
Nikoletta Murvai
Nevena Veljkovic
Peter Tompa
Tamas Lazar
Sonia Longhi
Arne Elofsson
Alessandra Gasparini
Damiano Piovesan
Silvio C. E. Tosatto
Daniel B. Roche
Zsuzsanna Dosztányi
Andrey V. Kajava
András Hatos
Christopher J. Oldfield
Università degli Studi di Padova = University of Padua (Unipd)
Institute of Medical Technology and Tampere University Hospital
University of Tampere [Finland]
Indiana University School of Medicine
Indiana University System
Conway Institute of Biomolecular & Biomedical Research
University College Dublin [Dublin] (UCD)
Vinča Institute of Nuclear Sciences
University of Belgrade [Belgrade]
Biophysics Research Group [Budapest] (ELTE-MTA 'Lendület')
Hungarian Academy of Sciences (MTA)
Stockholm University
Centre de recherche en Biologie cellulaire de Montpellier (CRBM)
Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Institut de Biologie Computationnelle (IBC)
Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
ITMO University [Russia]
University of Cambridge [UK] (CAM)
Structural Biology Brussels (SBB)
Vrije Universiteit Brussel (VUB)
Structural Biology Research Center, VIB, 1050 Brussels, Belgium
VIB-VUB Center for Structural Biology [Bruxelles]
VIB [Belgium]-VIB [Belgium]
Instituto de Biologia Molecular e Celular (IBMC)
Institut de Biotecnologia i Biomedicina
Universitat Autònoma de Barcelona (UAB)
Architecture et fonction des macromolécules biologiques (AFMB)
Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
Interuniversity Institute of Bioinformatics in Brussels (IB2)
Université libre de Bruxelles (ULB)-Vrije Universiteit Brussel (VUB)
Institute of Cytology of the Russian Academy of Science (St. Petersburg)
Morsani College of Medicine, Department of Pediatrics
University of South Florida [Tampa] (USF)
COST Action BM1405 NGP-net
ELIXIR-IIB (elixir-italy.org)
‘Lend ̈ulet’ Grant from the Hungarian Academyof Sciences [LP2014-16 to Z.D.]
Hungarian Scientific Re-search Fund [OTKA K 108798 to Z.D.]
AIRC ResearchFellowship (to D.P.)
Spanish Ministerio de Educaci ́on Cul-tura i Deporte PhD Fellowship (to J.P.)
Mexican Na-tional Council for Science and Technology (CONACYT)PhD Fellowship [215503 to M.M.-C.]
Grant PortoNeu-roDRIve@i3S funded by Norte Portugal Regional Opera-tional Programme (NORTE 2020), under the PORTUGAL2020 Partnership Agreement, through the European Re-gional Development Fund (ERDF) (to S.M.-R.)
DirectionG ́en ́erale des Arm ́ees and Aix-Marseille University PhDFellowship (to E.Sa.)
OTKA Grant [PD-OTKA 108772 toE.Sc.]
French Ministry of National Education, Researchand Technology PhD Fellowship (to A.S.)
Ministry of Ed-ucation, Science and Technological Development of the Re-public of Serbia [173001, 173049 to N.V., R.D.]
ICREA-Academia Award (to S.V.)
Odysseus Grant from ResearchFoundation Flanders (FWO) [G.0029.12 to P.T.]
AIRC IGGrant [17753 to S.T., in part]
Italian Ministry of Health[GR-2011-02347754 to E.L., S.T.
GR-2011-02346845 toS.T.]
Swedish Research Council Grant [VR-NT 2012-5046to A.E.]. Computational resources were provided by theSwedish National Infrastructure for Computing (SNIC)at NSC. Funding for open access charge: COST ActionBM1405 NGP-net
Universita degli Studi di Padova
University of Padova and INFN Padova
Centre de recherche en Biologie Cellulaire (CRBM)
Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Department of Veterinary Medicine, University of Cambridge, Cambridge, UK
Vrije Universiteit [Brussels] (VUB)
Universitat Autònoma de Barcelona [Barcelona] (UAB)
CNR Institute of Neuroscience, University of Padova
Interuniversity Institute of Bioinformatics in Brussels [ULB]
Université Libre de Bruxelles [Bruxelles] (ULB)
University of South Florida (USF)
Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Université Montpellier 1 (UM1)
Université de Montpellier (UM)-Institut National de la Recherche Agronomique (INRA)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)
Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA)
Source :
Nucleic Acids Research, Nucleic Acids Research, 2017, 45 (D1), pp.D219--D227. ⟨10.1093/nar/gkw1056⟩, Dipòsit Digital de Documents de la UAB, Universitat Autònoma de Barcelona, Nucleic Acids Research, Oxford University Press, 2017, 45 (D1), pp.D219--D227. ⟨10.1093/nar/gkw1056⟩, Nucleic acids research, 45 (D1
Publication Year :
2016

Abstract

The Database of Protein Disorder (DisProt, URL: www.disprot.org) has been significantly updated and upgraded since its last major renewal in 2007. The current release holds information on more than 800 entries of IDPs/IDRs, i.e. intrinsically disordered proteins or regions that exist and function without a well-defined three-dimensional structure. We have re-curated previous entries to purge DisProt from conflicting cases, and also upgraded the functional classification scheme to reflect continuous advance in the field in the past 10 years or so. We define IDPs as proteins that are disordered along their entire sequence, i.e. entirely lack structural elements, and IDRs as regions that are at least five consecutive residues without well-defined structure. We base our assessment of disorder strictly on experimental evidence, such as X-ray crystallography and nuclear magnetic resonance (primary techniques) and a broad range of other experimental approaches (secondary techniques). Confident and ambiguous annotations are highlighted separately. DisProt 7.0 presents classified knowledge regarding the experimental characterization and functional annotations of IDPs/IDRs, and is intended to provide an invaluable resource for the research community for a better understanding structural disorder and for developing better computational tools for studying disordered proteins.<br />SCOPUS: ar.j<br />info:eu-repo/semantics/published

Details

Language :
English
ISSN :
03051048 and 13624962
Database :
OpenAIRE
Journal :
Nucleic Acids Research, Nucleic Acids Research, 2017, 45 (D1), pp.D219--D227. ⟨10.1093/nar/gkw1056⟩, Dipòsit Digital de Documents de la UAB, Universitat Autònoma de Barcelona, Nucleic Acids Research, Oxford University Press, 2017, 45 (D1), pp.D219--D227. ⟨10.1093/nar/gkw1056⟩, Nucleic acids research, 45 (D1
Accession number :
edsair.doi.dedup.....f9b621eeb5e09105a919fe27cec6b910
Full Text :
https://doi.org/10.1093/nar/gkw1056⟩