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Genome sequence of the Litoreibacter arenae type strain (DSM 19593T), a member of the Roseobacter clade isolated from sea sand

Authors :
Hans-Peter Klenk
Markus Göker
Nikos C. Kyrpides
Thomas Riedel
Jörn Petersen
Anne Fiebig
Sabine Gronow
Laboratoire d'océanographie biologique de Banyuls (LOBB)
Observatoire océanologique de Banyuls (OOB)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
Laboratoire d'Océanographie Microbienne (LOMIC)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Leibniz-Institut Deutsche Sammlung von Mikroorganismen und Zelllkulturen GmBH - DSMZ (GERMANY)
DOE Joint Genome Institute [Walnut Creek]
Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Observatoire océanologique de Banyuls (OOB)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
Source :
Standards in Genomic Sciences, Standards in Genomic Sciences, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩, Standards in Genomic Sciences, BioMedCentral, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩
Publication Year :
2013
Publisher :
HAL CCSD, 2013.

Abstract

International audience; Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneous group of Alphaproteobacteria and were mostly found in coastal or polar waters, especially in symbiosis with algae, in microbial mats, in sediments or together with invertebrates and vertebrates. Here we describe the features of L. arenae DSM 19593T, including novel aspects of its phenotype, together with the draft genome sequence and annotation. The 3,690,113 bp long genome consists of 17 scaffolds with 3,601 protein-coding and 56 RNA genes. This genome was sequenced as part of the activities of the Transregional Collaborative Research Centre 51 funded by the German Research Foundation (DFG).

Details

Language :
English
ISSN :
19443277
Database :
OpenAIRE
Journal :
Standards in Genomic Sciences, Standards in Genomic Sciences, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩, Standards in Genomic Sciences, BioMedCentral, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩
Accession number :
edsair.doi.dedup.....f829b39a3aa26bfec5cdbc3299440110