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Genome sequence of the Litoreibacter arenae type strain (DSM 19593T), a member of the Roseobacter clade isolated from sea sand
- Source :
- Standards in Genomic Sciences, Standards in Genomic Sciences, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩, Standards in Genomic Sciences, BioMedCentral, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩
- Publication Year :
- 2013
- Publisher :
- HAL CCSD, 2013.
-
Abstract
- International audience; Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneous group of Alphaproteobacteria and were mostly found in coastal or polar waters, especially in symbiosis with algae, in microbial mats, in sediments or together with invertebrates and vertebrates. Here we describe the features of L. arenae DSM 19593T, including novel aspects of its phenotype, together with the draft genome sequence and annotation. The 3,690,113 bp long genome consists of 17 scaffolds with 3,601 protein-coding and 56 RNA genes. This genome was sequenced as part of the activities of the Transregional Collaborative Research Centre 51 funded by the German Research Foundation (DFG).
- Subjects :
- 0106 biological sciences
Thalassobacter arenae
chemoorganotrophic
010603 evolutionary biology
01 natural sciences
Genome
03 medical and health sciences
strictly aerobic
mesophile
sea sand
carbon monoxide utilization
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
Genetics
virus-like structures
14. Life underwater
Rhodobacteraceae
Clade
rod-shaped
Gene
030304 developmental biology
Alphaproteobacteria
Whole genome sequencing
0303 health sciences
halophilic
biology
Strain (biology)
marine
sulfur oxidation
Roseobacter
biology.organism_classification
[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
Short Genome Reports
sediment
motile
Subjects
Details
- Language :
- English
- ISSN :
- 19443277
- Database :
- OpenAIRE
- Journal :
- Standards in Genomic Sciences, Standards in Genomic Sciences, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩, Standards in Genomic Sciences, BioMedCentral, 2013, 9 (1), pp.117-127. ⟨10.4056/sigs.4258318⟩
- Accession number :
- edsair.doi.dedup.....f829b39a3aa26bfec5cdbc3299440110