Efficiency of RAPD markers for varietal identification in olive (Olea europea L.) germplasm collections

The aim of this study was to evaluate the resolving power of RAPD markers for rapid and reliable identification of olive cultivars in germplasm collections. The D parameter (the probability that two randomly chosen cultivars have different banding patterns), used for that purpose, showed high values for most of the 21 primers used and its values ranged from 0.6114 (OPI-13) to 0.9762 (OPK-16) with a mean value of 0.8566. This parameter was used to select the five most discriminating primers: OPK-16, OPA-19, OPX-09, OPF-06 and OPZ-11. The joint confusion probability and the statistical number of undistinguishable pairs of cultivars were estimated for these primers (under independence hypothesis). The combination of three primers (OPK-16, OPA-19 and OPX-09) was found optimal for rapid discrimination of 103 cultivars with a very low value of cumulative confusion probability (1.72 x 10-5), leaving 0.0903 pairs of cultivars undistinguishable. This fact together with the efficiency of the most discriminating primers combination on an increasing number of cultivars proved the utility of RAPD markers for varietal identification of olive cultivars in collections and in nurseries.