Back to Search
Start Over
Nocardioides albidus sp. nov., an actinobacterium isolated from garden soil
- Source :
- International Journal of Systematic and Evolutionary Microbiology. 66:371-378
- Publication Year :
- 2016
- Publisher :
- Microbiology Society, 2016.
-
Abstract
- A novel bacterial strain, designated THG-S11.7T, was isolated from garden soil in Incheon, South Korea. Cells of the strain were Gram-stain-positive, aerobic, non-motile cocci, and were catalase- and oxidase-positive. Colonies of the strain were white. Strain THG-S11.7T grew optimally at 28 °C, at pH 7.0 and in the presence of 2.0 % NaCl. 16S rRNA gene sequence analysis indicated that the strain was a member of the genus Nocardioides. Strain THG-S11.7T showed a 16S rRNA gene sequence similarity of 98.2 % to Nocardioides kongjuensis KCTC 19054T, 98.0 % to Nocardioides caeni KCTC 19600T, 97.9 % to Nocardioides daeguensis KCTC 19799T, 97.8 % to Nocardioides nitrophenolicus KCTC 047BPT, 97.6 % to Nocardioides aromaticivorans KACC 20613T, 97.5 % to Nocardioides simplex KACC 20620T and 97.0 % to Nocardioides ginsengisoli KCTC 19135T. DNA-DNA relatedness values between strain THG-S11.7T and the closest phylogenetic neighbours were below 45.0 % and the DNA G+C content of strain THG-S11.7T was 72.2 mol%. Strain THG-S11.7T was characterized chemotaxonomically as having ll-diaminopimelic acid in the cell-wall peptidoglycan and menaquinone MK-8(H4) as the predominant isoprenoid quinone. The major phospholipid was determined to be diphosphatidylglycerol. The major cellular fatty acids of strain THG-S11.7T were iso-C15 : 0, C16 : 0 and iso-C16 : 0. Based on the phenotypic, genotypic and phylogenetic analyses, it is proposed that the isolate represents a novel species of the genus Nocardioides, for which the name Nocardioides albidus sp. nov. is proposed. The type strain is THG-S11.7T ( = KCTC 39607T = CCTCC AB 2015297T).
- Subjects :
- DNA, Bacterial
0106 biological sciences
0301 basic medicine
Molecular Sequence Data
Biology
Diaminopimelic Acid
medicine.disease_cause
010603 evolutionary biology
01 natural sciences
Microbiology
03 medical and health sciences
RNA, Ribosomal, 16S
Actinomycetales
Republic of Korea
Botany
medicine
Nocardioides kongjuensis
Phospholipids
Phylogeny
Soil Microbiology
Ecology, Evolution, Behavior and Systematics
Base Composition
Nocardioides albidus
Strain (chemistry)
Nocardioides nitrophenolicus
Fatty Acids
Nocardioides caeni
Nucleic Acid Hybridization
Agriculture
Vitamin K 2
Sequence Analysis, DNA
General Medicine
Nocardioides daeguensis
Nocardioides aromaticivorans
Bacterial Typing Techniques
030104 developmental biology
Nocardioides ginsengisoli
Subjects
Details
- ISSN :
- 14665034 and 14665026
- Volume :
- 66
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology
- Accession number :
- edsair.doi.dedup.....f73ddaa6816a077bcb34bb65d3614336