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Whole exome sequencing, in silico and functional studies confirm the association of the GJB2 mutation p.Cys169Tyr with deafness and suggest a role for the TMEM59 gene in the hearing process

Authors :
Mona Mahfood
Rania Harati
Jihen Chouchen
Abdullah Al Mutery
Walaa Kamal Eddine Ahmad Mohamed
Abdelaziz Tlili
Source :
Saudi Journal of Biological Sciences, Saudi Journal of Biological Sciences, Vol 28, Iss 8, Pp 4421-4429 (2021)
Publication Year :
2021
Publisher :
Elsevier, 2021.

Abstract

The development of next generation sequencing techniques has facilitated the detection of mutations at an unprecedented rate. These efficient tools have been particularly beneficial for extremely heterogeneous disorders such as autosomal recessive non-syndromic hearing loss, the most common form of genetic deafness. GJB2 mutations are the most common cause of hereditary hearing loss. Amongst them the NM_004004.5: c.506G > A (p.Cys169Tyr) mutation has been associated with varying severity of hearing loss with unclear segregation patterns. In this study, we report a large consanguineous Emirati family with severe to profound hearing loss fully segregating the GJB2 missense mutation p.Cys169Tyr. Whole exome sequencing (WES), in silico, splicing and expression analyses ruled out the implication of any other variants and confirmed the implication of the p.Cys169Tyr mutation in this deafness family. We also show preliminary murine expression analysis that suggests a link between the TMEM59 gene and the hearing process. The present study improves our understanding of the molecular pathogenesis of hearing loss. It also emphasizes the significance of combining next generation sequencing approaches and segregation analyses especially in the diagnosis of disorders characterized by complex genetic heterogeneity.

Subjects

Subjects :
0106 biological sciences
0301 basic medicine
RFLP, restriction fragment length polymorphism
SAM, Sequence Alignment/Map
BWA, Burrows-Wheeler Aligner
01 natural sciences
ARNSHL, autosomal recessive non-syndromic hearing loss
Non-syndromic hearing loss
NSHL, Non-syndromic hearing loss
Missense mutation
BAM, Binary Alignment Map
VariMAT, Variation and Mutation Annotation Toolkit
Biology (General)
RT-qPCR, quantitative reverse transcription PCR
Exome sequencing
KCNQ3, Potassium Voltage-Gated Channel Subfamily Q Member 3
Genetics
WES, Whole exome sequencing
ST3GAL1, ST3 Beta-Galactoside Alpha-2,3-Sialyltransferase 1
Mutation (genetic algorithm)
gnomAD, genome aggregation database
Original Article
medicine.symptom
General Agricultural and Biological Sciences
GJB2, Gap Junction Protein Beta 2
gEAR, gene Expression Analysis Resource
Hearing loss
QH301-705.5
In silico
Biology
SJL, Swiss Jim Lambert
DNA sequencing
SPATA13, Spermatogenesis Associated 13
HL, Hearing loss
03 medical and health sciences
PROVEAN, Protein Variation Effect Analyzer
UAE, United Arab Emirates
medicine
otorhinolaryngologic diseases
dpSNP, Single Nucleotide Polymorphism Database
Gene
Genetic heterogeneity
C1QTNF9, C1q and TNF related 9
Whole exome sequencing
SIFT, Sorting Intolerant From Tolerant
NGS, next generation sequencing
PolyPhen-2, Polymorphism Phenotyping v2
TMEM59, Transmembrane Protein 59
RT-PCR, reverse transcription PCR
030104 developmental biology
HHLA1, HERV-H LTR-Associating 1
Cx26, Connexin 26
qPCR, quantitative PCR
ESRRAP2, Estrogen-Related Receptor Alpha Pseudogene 2
ROH, runs of homozygosity
010606 plant biology & botany
GJB2 gene
Actb, Actin beta

Details

Language :
English
ISSN :
22137106 and 1319562X
Volume :
28
Issue :
8
Database :
OpenAIRE
Journal :
Saudi Journal of Biological Sciences
Accession number :
edsair.doi.dedup.....f64784a76361bd03c51d0cb19e0388e9