Structural and photosynthetic dynamics mediate the response of SIF to water stress in a potato crop

Solar-induced Fluorescence (SIF) has an advantage over greenness-based Vegetation Indices in detecting drought. This advantage is the mechanistic coupling between SIF and Gross Primary Productivity (GPP). Under water stress, SIF tends to decrease with photosynthesis, due to an increase in non-photochemical quenching (NPQ), resulting in rapid and/or sustained reductions in the fluorescence quantum efficiency (phi F). Water stress also affects vegetation structure via highly dynamic changes in leaf angular distributions (LAD) or slower changes in leaf area index (LAI). Critically, these responses are entangled in space and time and their relative contribution to SIF, or to the coupling between SIF and GPP, is unclear. In this study, we quantify the relative effect of structural and photosynthetic dynamics on the diurnal and spatial variation of canopy SIF in a potato crop in response to a replicated paired-plot water stress experiment. We measured SIF using two platforms: a hydraulic lift and an Unmanned Aerial Vehicle (UAV) to capture temporal and spatial variation, respectively. LAD parameters were estimated from point clouds and photographic data and used to assess structural dynamics. Leaf phi F estimated from PAM fluorescence measurements were used to represent variations in photosynthetic regulation. We also measured foliar pigments, operating quantum yield of photosystem II (PSII), photosynthetic gas exchange, stomatal conductance and LAI. We used a radiative transfer model (SCOPE) to provide a means of decoupling structural and photosynthetic factors across the diurnal and spatial domains. The results demonstrate that diurnal variation in SIF is driven by photosynthetic and structural dynamics. The influence of phi F was prominent in the diurnal SIF response to water stress, with reduced fluorescence efficiencies in stressed plants. Structural factors dominated the spatial response of SIF to water stress over and above phi F. The results showed that the relationship between SIF and GPP is maintained in response to water stress where adjustments in NPQ and leaf angle co-operate to enhance the correlation between SIF and GPP. This study points to the complexity of interpreting and modelling the spatiotemporal connection between SIF and GPP which requires simultaneous knowledge of vegetation structural and photosynthetic dynamics.