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Picosecond to nanosecond dynamics provide a source of conformational entropy for protein folding
- Source :
- Physical Chemistry Chemical Physics, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2016, 18 (31), pp.21527-21538. ⟨10.1039/c6cp04146a⟩, Physical chemistry, chemical physics 18(31), 21527-21538 (2016). doi:10.1039/C6CP04146A, 'Physical Chemistry Chemical Physics ', vol: 18, pages: 21527-21538 (2016)
- Publication Year :
- 2016
- Publisher :
- HAL CCSD, 2016.
-
Abstract
- Myoglobin can be trapped in fully folded structures, partially folded molten globules, and unfolded states under stable equilibrium conditions. Here, we report an experimental study on the conformational dynamics of different folded conformational states of apo- and holomyoglobin in solution. Global protein diffusion and internal molecular motions were probed by neutron time-of-flight and neutron backscattering spectroscopy on the picosecond and nanosecond time scales. Global protein diffusion was found to depend on the α-helical content of the protein suggesting that charges on the macromolecule increase the short-time diffusion of protein. With regard to the molten globules, a gel-like phase due to protein entanglement and interactions with neighbouring macromolecules was visible due to a reduction of the global diffusion coefficients on the nanosecond time scale. Diffusion coefficients, residence and relaxation times of internal protein dynamics and root mean square displacements of localised internal motions were determined for the investigated structural states. The difference in conformational entropy ΔSconf of the protein between the unfolded and the partially or fully folded conformations was extracted from the measured root mean square displacements. Using thermodynamic parameters from the literature and the experimentally determined ΔSconf values we could identify the entropic contribution of the hydration shell ΔShydr of the different folded states. Our results point out the relevance of conformational entropy of the protein and the hydration shell for stability and folding of myoglobin.
- Subjects :
- 0301 basic medicine
Models, Molecular
Protein Folding
Time Factors
Protein Conformation
Entropy
[PHYS.PHYS.PHYS-BIO-PH]Physics [physics]/Physics [physics]/Biological Physics [physics.bio-ph]
General Physics and Astronomy
010402 general chemistry
01 natural sciences
03 medical and health sciences
Physical and Theoretical Chemistry
Diffusion (business)
ComputingMilieux_MISCELLANEOUS
Quantitative Biology::Biomolecules
Chemistry
Protein dynamics
Nanosecond
Conformational entropy
Contact order
0104 chemical sciences
Folding (chemistry)
Crystallography
030104 developmental biology
Solvation shell
Chemical physics
ddc:540
Protein folding
[PHYS.COND.CM-SCM]Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft]
Subjects
Details
- Language :
- English
- ISSN :
- 14639076 and 14639084
- Database :
- OpenAIRE
- Journal :
- Physical Chemistry Chemical Physics, Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2016, 18 (31), pp.21527-21538. ⟨10.1039/c6cp04146a⟩, Physical chemistry, chemical physics 18(31), 21527-21538 (2016). doi:10.1039/C6CP04146A, 'Physical Chemistry Chemical Physics ', vol: 18, pages: 21527-21538 (2016)
- Accession number :
- edsair.doi.dedup.....ef8af88ceda8142ea00c713fe2b0ec9c
- Full Text :
- https://doi.org/10.1039/c6cp04146a⟩