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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Authors :
Marc A. Marti-Renom
John D. Westbrook
Eldon L. Ulrich
Wah Chiu
Randy J. Read
Catherine L. Lawson
Ruth Nussinov
Kay Grünewald
Gerhard Hummer
Aleksandras Gutmanas
Ardan Patwardhan
Maya Topf
Matteo Dal Peraro
Frank Di Maio
Gerard J. Kleywegt
Paul D. Adams
Claus A. M. Seidel
Jill Trewhella
Thomas E. Ferrin
Jens Meiler
Kenji Iwasaki
Andrej Sali
Michael Nilges
Richard Henderson
Alexandre M. J. J. Bonvin
Helen M. Berman
Graham T. Johnson
Helen R. Saibil
Haruki Nakamura
Stephen K. Burley
Gunnar F. Schröder
John L. Markley
Torsten Schwede
Dmitri I. Svergun
Sameer Velankar
Charles D. Schwieters
Gaetano T. Montelione
Juri Rappsilber
Department of Bioengineering and Therapeutic Sciences
University of California [San Francisco] (UCSF)
University of California-University of California
Research Collaboratory for Structural Bioinformatics Protein Data Bank
Rutgers, The State University of New Jersey [New Brunswick] (RU)
Rutgers University System (Rutgers)-Rutgers University System (Rutgers)-Center for Integrative Proteomics Research
School of Molecular and Microbial Biosciences
The University of Sydney
Protein Data Bank in Europe, European Molecular Biology Laboratory
European Bioinformatics Institute
Skaggs School of Pharmacy and Pharmaceutical Sciences and San Diego Supercomputer Center
University of California [San Diego] (UC San Diego)
BioMagResBank, Department of Biochemistry
University of Wisconsin-Madison
Institute for Protein Research [Osaka]
Osaka University [Osaka]
Physical Biosciences Division [LBNL Berkeley]
Lawrence Berkeley National Laboratory [Berkeley] (LBNL)
Department of Bioengineering
Bijvoet Center for Biomolecular Research [Utrecht]
Utrecht University [Utrecht]
National Center for Environmental Assessment
US Environmental Protection Agency (EPA)
National Center for Macromolecular Imaging
Baylor College of Medecine
Institute of Bioengineering
Ecole Polytechnique Fédérale de Lausanne (EPFL)
Department of Biochemistry [Washington ]
University of Washington [Seattle]
Division of Structural Biology
Wellcome Trust Centre of Human Genetics, University of Oxford
Laboratory of Molecular Biology [Cambridge]
Medical Research Council
Department of Theoretical Biophysics [Frankfurt am Main]
Max-Planck-Institut für Biophysik - Max Planck Institute of Biophysics (MPIBP)
Max-Planck-Gesellschaft-Max-Planck-Gesellschaft
Department of Chemistry, Center for Structural Biology
Vanderbilt University [Nashville]
Genome Biology Group, Centre Nacional d'Anàlisi Genòmica (CNAG), Gene Regulation, Stem Cells and Cancer Program
Université de Rouen Normandie (UNIROUEN)
Normandie Université (NU)-Normandie Université (NU)
Department of Biochemistry
Rutgers University System (Rutgers)-Rutgers University System (Rutgers)
Bioinformatique structurale - Structural Bioinformatics
Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
Cancer and Inflammation Program, Leidos Biomedical Research Inc., Frederick National Laboratory
Frederick National Laboratory for Cancer Research (FNLCR)
Department of Human Molecular Genetics and Biochemistry
Tel Aviv University [Tel Aviv]
Wellcome Trust Centre for Cell Biology
University of Edinburgh
Department of Bioanalytics
Technische Universität Berlin (TU)
Department of Haematology
University of Cambridge [UK] (CAM)
Department of Biological Sciences
Birkbeck College [University of London]-Institute of Structural and Molecular Biology (ISMB)
Institute of Complex Systems (ICS)
Forschungszentrum Jülich GmbH | Centre de recherche de Juliers
Helmholtz-Gemeinschaft = Helmholtz Association-Helmholtz-Gemeinschaft = Helmholtz Association
Physics Department [Düsseldorf]
Heinrich Heine Universität Düsseldorf = Heinrich Heine University [Düsseldorf]
Division of Computational Bioscience
National Institutes of Health
Chair for Molecular Physical Chemistry
The workshop was supported by funding to PDBe by Wellcome Trust 088944
RCSB PDB by NSF DBI 1338415
PDBj by JST-NBDC
BMRB by NLM P41 LM05799
EMDataBank by NIH GM079429
and tax-deductible donations made to the wwPDB Foundation in support of wwPDB outreach activities.
Sub NMR Spectroscopy
NMR Spectroscopy
University of California [San Francisco] (UC San Francisco)
University of California (UC)-University of California (UC)
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
Tel Aviv University (TAU)
Technical University of Berlin / Technische Universität Berlin (TU)
Source :
Sali, A; Berman, HM; Schwede, T; Trewhella, J; Kleywegt, G; Burley, SK; et al.(2015). Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure, 23(7), 1156-1167. doi: 10.1016/j.str.2015.05.013. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/0b3514ms, Structure, vol 23, iss 7, Structure, Structure, Elsevier (Cell Press), 2015, 23 (7), pp.1156-67. ⟨10.1016/j.str.2015.05.013⟩, Europe PubMed Central, Structure, 2015, 23 (7), pp.1156-67. ⟨10.1016/j.str.2015.05.013⟩, Structure (London England : 1993), Structure (London, England : 1993), vol 23, iss 7, Structure, 23(7), 1156. Cell Press
Publication Year :
2015

Abstract

Structures of biomolecular systems are increasingly computed by integrative modeling that relies on varied types of experimental data and theoretical information. We describe here the proceedings and conclusions from the first wwPDB Hybrid/Integrative Methods Task Force Workshop held at the European Bioinformatics Institute in Hinxton, UK, on October 6 and 7, 2014. At the workshop, experts in various experimental fields of structural biology, experts in integrative modeling and visualization, and experts in data archiving addressed a series of questions central to the future of structural biology. How should integrative models be represented? How should the data and integrative models be validated? What data should be archived? How should the data and models be archived? What information should accompany the publication of integrative models? The workshop was supported by funding to PDBe by Wellcome Trust 088944; RCSB PDB by NSF DBI 1338415; PDBj by JST-NBDC; BMRB by NLM P41 LM05799; EMDataBank by NIH GM079429; and tax-deductible donations made to the wwPDB Foundation in support of wwPDB outreach activities.

Details

Language :
English
ISSN :
09692126
Volume :
23
Issue :
7
Database :
OpenAIRE
Journal :
Structure
Accession number :
edsair.doi.dedup.....ee3da9b7b9ee629c28d794af5a5d649c
Full Text :
https://doi.org/10.1016/j.str.2015.05.013