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MiBiOmics: an interactive web application for multi-omics data exploration and integration
- Source :
- BMC Bioinformatics, BMC Bioinformatics, BioMed Central, 2021, 22 (1), ⟨10.1186/s12859-020-03921-8⟩, BMC Bioinformatics, 2021, 22 (1), ⟨10.1186/s12859-020-03921-8⟩, BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
- Publication Year :
- 2021
- Publisher :
- HAL CCSD, 2021.
-
Abstract
- BackgroundMulti-omics experimental approaches are becoming common practice in biological and medical sciences underlying the need to design new integrative techniques and applications to enable the holistic characterization of biological systems. The integrative analysis of heterogeneous datasets generally allows us to acquire additional insights and generate novel hypotheses about a given biological system. However, it can often become challenging given the large size of omics datasets and the diversity of existing techniques. Moreover, visualization tools for interpretation are usually non-accessible to biologists without programming skills.ResultsHere, we present MiBiOmics, a web-based and standalone application that facilitates multi-omics data visualization, exploration, integration, and analysis by providing easy access to dedicated and interactive protocols. It implements advanced ordination techniques and the inference of omics-based (multi-layer) networks to mine complex biological systems, and identify robust biomarkers linked to specific contextual parameters or biological states.ConclusionsThrough an intuitive and interactive interface, MiBiOmics provides easy-access to ordination techniques and to a network-based approach for integrative multi-omics analyses. MiBiOmics is currently available as a Shiny app at https://shiny-bird.univ-nantes.fr/app/Mibiomics and as a standalone application at https://gitlab.univ-nantes.fr/combi-ls2n/mibiomics.
- Subjects :
- Intégration de données
Interface (Java)
Computer science
lcsh:Computer applications to medicine. Medical informatics
Models, Biological
03 medical and health sciences
0302 clinical medicine
Data visualization
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
[SDV.EE.ECO] Life Sciences [q-bio]/Ecology, environment/Ecosystems
Web application
lcsh:QH301-705.5
Ordination
ComputingMilieux_MISCELLANEOUS
030304 developmental biology
0303 health sciences
Internet
Multi-omics
Data exploration
[SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
business.industry
Biological networks
Multi-omique
Computational Biology
[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular Networks [q-bio.MN]
[SDV.EE.IEO] Life Sciences [q-bio]/Ecology, environment/Symbiosis
Omics
Data science
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Réseaux biologiques
Visualization
[SDE.BE] Environmental Sciences/Biodiversity and Ecology
lcsh:Biology (General)
[SDV.BBM.MN] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular Networks [q-bio.MN]
lcsh:R858-859.7
Biomarker (medicine)
Multi omics
[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
Data integration
R shiny
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
business
030217 neurology & neurosurgery
Software
[SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis
Subjects
Details
- Language :
- English
- ISSN :
- 14712105
- Database :
- OpenAIRE
- Journal :
- BMC Bioinformatics, BMC Bioinformatics, BioMed Central, 2021, 22 (1), ⟨10.1186/s12859-020-03921-8⟩, BMC Bioinformatics, 2021, 22 (1), ⟨10.1186/s12859-020-03921-8⟩, BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
- Accession number :
- edsair.doi.dedup.....edbe6c667665fbe68466149ece1ed86b