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The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

Authors :
Heather, Bracken-Grissom
Allen G, Collins
Timothy, Collins
Keith, Crandall
Daniel, Distel
Casey, Dunn
Gonzalo, Giribet
Steven, Haddock
Nancy, Knowlton
Mark, Martindale
Mónica, Medina
Charles, Messing
Stephen J, O'Brien
Gustav, Paulay
Nicolas, Putnam
Timothy, Ravasi
Greg W, Rouse
Joseph F, Ryan
Anja, Schulze
Gert, Wörheide
Maja, Adamska
Xavier, Bailly
Jesse, Breinholt
William E, Browne
M Christina, Diaz
Nathaniel, Evans
Jean-François, Flot
Nicole, Fogarty
Matthew, Johnston
Bishoy, Kamel
Akito Y, Kawahara
Tammy, Laberge
Dennis, Lavrov
François, Michonneau
Leonid L, Moroz
Todd, Oakley
Karen, Osborne
Shirley A, Pomponi
Adelaide, Rhodes
Scott R, Santos
Nori, Satoh
Robert W, Thacker
Yves, Van de Peer
Christian R, Voolstra
David Mark, Welch
Judith, Winston
Xin, Zhou
Source :
Journal of Heredity. 105:1-18
Publication Year :
2013
Publisher :
Oxford University Press (OUP), 2013.

Abstract

Over 95% of all metazoan (animal) species comprise the “invertebrates,” but very few genomes from these organisms have been sequenced. We have, therefore, formed a “Global Invertebrate Genomics Alliance” (GIGA). Our intent is to build a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. We aim to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community. Candidate study taxa include species from Porifera, Ctenophora, Cnidaria, Placozoa, Mollusca, Arthropoda, Echinodermata, Annelida, Bryozoa, and Platyhelminthes, among others. GIGA will target 7000 noninsect/nonnematode species, with an emphasis on marine taxa because of the unrivaled phyletic diversity in the oceans. Priorities for selecting invertebrates for sequencing will include, but are not restricted to, their phylogenetic placement; relevance to organismal, ecological, and conservation research; and their importance to fisheries and human health. We highlight benefits of sequencing both whole genomes (DNA) and transcriptomes and also suggest policies for genomic-level data access and sharing based on transparency and inclusiveness. The GIGA Web site (http://giga.nova.edu) has been launched to facilitate this collaborative venture.

Details

ISSN :
14657333 and 00221503
Volume :
105
Database :
OpenAIRE
Journal :
Journal of Heredity
Accession number :
edsair.doi.dedup.....ec9ffe6b5fbeb265547d5dcf17d9b12d