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A 7-lncRNA signature predict prognosis of Uterine corpus endometrial carcinoma
- Source :
- Journal of cellular biochemistry. 120(10)
- Publication Year :
- 2019
-
Abstract
- Current research indicate that long noncoding RNAs (lncRNAs) are associated with the progression of various cancers and can be used as prognostic biomarkers. This study aims to construct a prognostic lncRNA signature for the risk assessment of Uterine corpus endometrial carcinoma (UCEC). The RNA-Seq expression profile and corresponding clinical data of UCEC patients obtained from The Cancer Genome Atlas database. First, some prognosis-related lncRNAs were obtained by univariate Cox analysis. The minimum absolute contraction and selection operator (LASSO) regression and the Cox proportional hazard regression method were used to further identify the lncRNA prognostic model. Finally, seven lncRNAs (AC110491.1, AL451137.1, AC005381.1, AC103563.2, AC007422.2, AC108025.2, and MIR7-3HG) were identified as potential prognostic factors. According to the model constructed by the above analysis, the risk score of each UCEC patient was calculated, and the patients were classified into high and low-risk groups. The low-risk group had significant survival benefits. Moreover, we constructed a nomogram that incorporated independent prognostic factors (age, tumor stage, tumor grade, and risk score). The c-index value for evaluating the predictive nomogram model was 0.801. The area under the curve was 0.797 (3-year survival). The calibration curve also showed that there was a satisfactory agreement between the predicted and observed values in the probability of 1-, 3-, and 5-year overall survival. On the basis of the coexpression relationship, we established a coexpression network of lncRNA-messenger RNA (mRNA) of the 7-lncRNA. The Kyoto Encyclopedia of Genes and Genomes analysis of the coexpressing mRNAs showed that the main pathways related to the 7-lncRNA signature were neuroactive ligand-receptor interaction, serotonergic synapse, and gastric cancer pathway. Therefore, our study revealed that the 7-lncRNA could be used to predict the prognosis of UCEC and for postoperative treatment and follow-up.
- Subjects :
- 0301 basic medicine
Oncology
medicine.medical_specialty
Kaplan-Meier Estimate
Biochemistry
03 medical and health sciences
0302 clinical medicine
Internal medicine
medicine
Carcinoma
Biomarkers, Tumor
Humans
RNA, Messenger
KEGG
Molecular Biology
Framingham Risk Score
business.industry
Area under the curve
Cell Biology
Nomogram
Middle Aged
medicine.disease
Prognosis
Regression
Long non-coding RNA
Endometrial Neoplasms
Gene Expression Regulation, Neoplastic
030104 developmental biology
030220 oncology & carcinogenesis
Female
RNA, Long Noncoding
business
Risk assessment
Carcinoma, Endometrioid
Subjects
Details
- ISSN :
- 10974644
- Volume :
- 120
- Issue :
- 10
- Database :
- OpenAIRE
- Journal :
- Journal of cellular biochemistry
- Accession number :
- edsair.doi.dedup.....ea966a425f78768869c31dd4d5110251