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The active site structure and catalytic mechanism of arsenite oxidase
- Source :
- Scientific Reports, Vol 7, Iss 1, Pp 1-9 (2017), Scientific Reports
- Publication Year :
- 2017
- Publisher :
- Nature Portfolio, 2017.
-
Abstract
- Arsenite oxidase is thought to be an ancient enzyme, originating before the divergence of the Archaea and the Bacteria. We have investigated the nature of the molybdenum active site of the arsenite oxidase from the Alphaproteobacterium Rhizobium sp. str. NT-26 using a combination of X-ray absorption spectroscopy and computational chemistry. Our analysis indicates an oxidized Mo(VI) active site with a structure that is far from equilibrium. We propose that this is an entatic state imposed by the protein on the active site through relative orientation of the two molybdopterin cofactors, in a variant of the Rây-Dutt twist of classical coordination chemistry, which we call the pterin twist hypothesis. We discuss the implications of this hypothesis for other putatively ancient molybdopterin-based enzymes.
- Subjects :
- Models, Molecular
0301 basic medicine
Stereochemistry
Science
Coenzymes
Entatic state
Bioinformatics
Article
Protein Structure, Secondary
Cofactor
Coordination complex
03 medical and health sciences
chemistry.chemical_compound
Protein structure
Catalytic Domain
Metalloproteins
Pterin
Density Functional Theory
chemistry.chemical_classification
Multidisciplinary
biology
Pteridines
Molybdopterin
Active site
X-Ray Absorption Spectroscopy
030104 developmental biology
Enzyme
chemistry
Biocatalysis
biology.protein
Medicine
Oxidoreductases
Molybdenum Cofactors
Oxidation-Reduction
Rhizobium
Subjects
Details
- Language :
- English
- ISSN :
- 20452322
- Volume :
- 7
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....e9e8e9819f07639a265b945a3bb0d315