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Aspartase/Fumarase Superfamily
- Source :
- Biochemistry, 51(21), 4237-4243. AMER CHEMICAL SOC
- Publication Year :
- 2012
-
Abstract
- Members of the aspartase/fumarase superfamily share a common tertiary and quaternary fold, as well as a similar active site architecture; the superfamily includes aspartase, fumarase, argininosuccinate lyase, adenylosuccinate lyase, delta-crystallin, and 3-carboxy-cis,cis-muconate lactonizing enzyme (CMLE). These enzymes all process succinyl-containing substrates, leading to the formation of fumarate as the common product (except for the CMLE-catalyzed reaction, which results in the formation of a lactone). In the past few years, X-ray crystallographic analysis of several superfamily members in complex with substrate, product, or substrate analogues has provided detailed insights into their substrate binding modes and catalytic mechanisms. This structural work, combined with earlier mechanistic studies, revealed that members of the aspartase/fumarase superfamily use a common catalytic strategy, which involves general base-catalyzed formation of a stabilized aci-carboxylate (or enediolate) intermediate and the participation of a highly flexible loop, containing the signature sequence GSSxxPxKxN (named the SS loop), in substrate binding and catalysis.
- Subjects :
- Models, Molecular
ARGININOSUCCINATE LYASE
Saccharomyces cerevisiae Proteins
ASPARTATE AMMONIA-LYASE
Stereochemistry
Molecular Sequence Data
delta-Crystallins
SUBTILIS ADENYLOSUCCINATE LYASE
Saccharomyces cerevisiae
Biology
Aspartate ammonia-lyase
Biochemistry
Catalysis
Fumarate Hydratase
Substrate Specificity
Protein structure
Catalytic Domain
Escherichia coli
Humans
CRYSTAL-STRUCTURE
Amino Acid Sequence
Site-directed mutagenesis
Adenylosuccinate lyase
Intramolecular Lyases
Protein Structure, Quaternary
Conserved Sequence
chemistry.chemical_classification
CHEMICAL MECHANISM
3-CARBOXY-CIS
Sequence Homology, Amino Acid
ACTIVE-SITE
Escherichia coli Proteins
Adenylosuccinate Lyase
3-CARBOXY-CIS,CIS-MUCONATE LACTONIZING ENZYME
Active site
BACILLUS SP YM55-1
CIS-MUCONATE LACTONIZING ENZYME
Argininosuccinate lyase
Protein Structure, Tertiary
Enzyme
chemistry
ESCHERICHIA-COLI
Fumarase
biology.protein
SITE-DIRECTED MUTAGENESIS
Subjects
Details
- Language :
- English
- ISSN :
- 00062960
- Volume :
- 51
- Issue :
- 21
- Database :
- OpenAIRE
- Journal :
- Biochemistry
- Accession number :
- edsair.doi.dedup.....e9b9c2262422fb2dd9344f1a05552b30
- Full Text :
- https://doi.org/10.1021/bi300430j