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Reliability of bond dissociation enthalpy calculated by the PM6 method and experimental TEAC values in antiradical QSAR of flavonoids
- Source :
- Bioorganic & Medicinal Chemistry. 18:28-35
- Publication Year :
- 2010
- Publisher :
- Elsevier BV, 2010.
-
Abstract
- The applicability of the newly developed RM1 and PM6 methods implemented in the semiempirical quantum chemistry mopac2009 software package in modeling free radical scavenging activity of flavonoids was examined. Bond dissociation enthalpy (BDE) of OH groups could be calculated much faster than with DFT method but with similar quality. Despite the known shortcomings of the Trolox equivalent antioxidant capacity (TEAC) assay, we show that taking into account the hydrogen atom transfer (HAT) mechanism of free radical scavenging of flavonoids encoded by minimal BDE values (BDE(min)) and the number of OH groups (nOH), as well as experimental data, reasonable QSAR models could be developed. For TEAC values of 38 flavonoids measured by the ABTS free radical, a model based on BDE(min) and nOH was developed, having very good statistical parameters (r=0.983, r(cv)=0.976). The applicability of this model to three different data sets of flavonoids and reliability of TEAC values measured in distinct laboratories were discussed. Finally, a reasonably good model of experimental vitamin C equivalent antioxidant capacity (VCEAC) of 36 flavonoids was obtained (r=0.954, r(cv)=0.947), involving BDE(min) and nOH as descriptors. Additionally, all presented models have comparable fit and cross-validated statistical parameters, as well as significant regression coefficients.
- Subjects :
- Quantitative structure–activity relationship
Clinical Biochemistry
Trolox equivalent antioxidant capacity
Quantitative Structure-Activity Relationship
Pharmaceutical Science
Models, Biological
Biochemistry
Quantum chemistry
chemistry.chemical_compound
flavonoids
free radical scavenging
QSAR modeling
PM6 method
RM1 method
bond dissociation enthalpy
ABTS assay
TEAC
VCEAC
Computational chemistry
Drug Discovery
Linear regression
Organic chemistry
Molecular Biology
Flavonoids
Free Radical Scavenging Activity
ABTS
Chemistry
Organic Chemistry
Free Radical Scavengers
Bond-dissociation energy
Antioxidant capacity
Quantum Theory
Thermodynamics
Molecular Medicine
Software
Subjects
Details
- ISSN :
- 09680896
- Volume :
- 18
- Database :
- OpenAIRE
- Journal :
- Bioorganic & Medicinal Chemistry
- Accession number :
- edsair.doi.dedup.....e770cd4000d60926e35e0538148952e3