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Identification of key candidate genes and pathways in multiple myeloma by integrated bioinformatics analysis

Authors :
Jianwei Qu
Enfan Zhang
Yang Liu
Haimeng Yan
Gaofeng Zheng
Xi Huang
Zhen Cai
Source :
Journal of Cellular Physiology
Publication Year :
2019
Publisher :
Wiley, 2019.

Abstract

Multiple myeloma (MM) is a common hematologic malignancy for which the underlying molecular mechanisms remain largely unclear. This study aimed to elucidate key candidate genes and pathways in MM by integrated bioinformatics analysis. Expression profiles {"type":"entrez-geo","attrs":{"text":"GSE6477","term_id":"6477"}}GSE6477 and {"type":"entrez-geo","attrs":{"text":"GSE47552","term_id":"47552"}}GSE47552 were obtained from the Gene Expression Omnibus database, and differentially expressed genes (DEGs) with p 1 were identified. Functional enrichment, protein–protein interaction network construction and survival analyses were then performed. First, 51 upregulated and 78 downregulated DEGs shared between the two GSE datasets were identified. Second, functional enrichment analysis showed that these DEGs are mainly involved in the B cell receptor signaling pathway, hematopoietic cell lineage, and NF‐kappa B pathway. Moreover, interrelation analysis of immune system processes showed enrichment of the downregulated DEGs mainly in B cell differentiation, positive regulation of monocyte chemotaxis and positive regulation of T cell proliferation. Finally, the correlation between DEG expression and survival in MM was evaluated using the PrognoScan database. In conclusion, we identified key candidate genes that affect the outcomes of patients with MM, and these genes might serve as potential therapeutic targets.

Details

ISSN :
10974652 and 00219541
Volume :
234
Database :
OpenAIRE
Journal :
Journal of Cellular Physiology
Accession number :
edsair.doi.dedup.....e73e56f09298fd8116dcf48424000e8f