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Identification of key candidate genes and pathways in multiple myeloma by integrated bioinformatics analysis
- Source :
- Journal of Cellular Physiology
- Publication Year :
- 2019
- Publisher :
- Wiley, 2019.
-
Abstract
- Multiple myeloma (MM) is a common hematologic malignancy for which the underlying molecular mechanisms remain largely unclear. This study aimed to elucidate key candidate genes and pathways in MM by integrated bioinformatics analysis. Expression profiles {"type":"entrez-geo","attrs":{"text":"GSE6477","term_id":"6477"}}GSE6477 and {"type":"entrez-geo","attrs":{"text":"GSE47552","term_id":"47552"}}GSE47552 were obtained from the Gene Expression Omnibus database, and differentially expressed genes (DEGs) with p 1 were identified. Functional enrichment, protein–protein interaction network construction and survival analyses were then performed. First, 51 upregulated and 78 downregulated DEGs shared between the two GSE datasets were identified. Second, functional enrichment analysis showed that these DEGs are mainly involved in the B cell receptor signaling pathway, hematopoietic cell lineage, and NF‐kappa B pathway. Moreover, interrelation analysis of immune system processes showed enrichment of the downregulated DEGs mainly in B cell differentiation, positive regulation of monocyte chemotaxis and positive regulation of T cell proliferation. Finally, the correlation between DEG expression and survival in MM was evaluated using the PrognoScan database. In conclusion, we identified key candidate genes that affect the outcomes of patients with MM, and these genes might serve as potential therapeutic targets.
- Subjects :
- 0301 basic medicine
bioinformatics analysis
Candidate gene
Monocyte chemotaxis
Physiology
T cell
Clinical Biochemistry
Computational biology
Biology
03 medical and health sciences
0302 clinical medicine
Downregulation and upregulation
Original Research Articles
Databases, Genetic
Biomarkers, Tumor
medicine
Cluster Analysis
Humans
Gene Regulatory Networks
Original Research Article
Protein Interaction Maps
Gene
B cell receptor signaling pathway
B cell
Multiple myeloma
Gene Expression Profiling
immune‐associated genes
Computational Biology
Cell Biology
Prognosis
medicine.disease
multiple myeloma
Gene Expression Regulation, Neoplastic
030104 developmental biology
medicine.anatomical_structure
030220 oncology & carcinogenesis
Transcriptome
Subjects
Details
- ISSN :
- 10974652 and 00219541
- Volume :
- 234
- Database :
- OpenAIRE
- Journal :
- Journal of Cellular Physiology
- Accession number :
- edsair.doi.dedup.....e73e56f09298fd8116dcf48424000e8f