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Exome sequencing and network analysis identifies shared mechanisms underlying spinocerebellar ataxia

Authors :
Esther A. R. Nibbeling
Monique H.M. Vlak
Cleo J. L. M. Smeets
Bart P.C. van de Warrenburg
Cleo C. van Diemen
Berry Kremer
Corien C. Verschuuren-Bemelmans
Anna Duarri
Lude Franke
Richard J. Sinke
Juha Karjalainen
Dineke S. Verbeek
Giovana B Bampi
Noam Adir
Elly F. Ippel
Cisca Wijmenga
Gerben van der Vries
Dennis Dooijes
Michiel R. Fokkens
Ewout R. Brunt
Jelkje J. de Boer-Bergsma
Molecular Neuroscience and Ageing Research (MOLAR)
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
Department of Health and Life Sciences
Movement Disorder (MD)
Stem Cell Aging Leukemia and Lymphoma (SALL)
Source :
Brain, 140, 11, pp. 2860-2878, Brain, 140(11), 2860-2878. Oxford University Press, Brain, 140(11), 2860. Oxford University Press, Brain, 140, 2860-2878
Publication Year :
2017

Abstract

Item does not contain fulltext The autosomal dominant cerebellar ataxias, referred to as spinocerebellar ataxias in genetic nomenclature, are a rare group of progressive neurodegenerative disorders characterized by loss of balance and coordination. Despite the identification of numerous disease genes, a substantial number of cases still remain without a genetic diagnosis. Here, we report five novel spinocerebellar ataxia genes, FAT2, PLD3, KIF26B, EP300, and FAT1, identified through a combination of exome sequencing in genetically undiagnosed families and targeted resequencing of exome candidates in a cohort of singletons. We validated almost all genes genetically, assessed damaging effects of the gene variants in cell models and further consolidated a role for several of these genes in the aetiology of spinocerebellar ataxia through network analysis. Our work links spinocerebellar ataxia to alterations in synaptic transmission and transcription regulation, and identifies these as the main shared mechanisms underlying the genetically diverse spinocerebellar ataxia types.

Details

ISSN :
00068950
Database :
OpenAIRE
Journal :
Brain, 140, 11, pp. 2860-2878, Brain, 140(11), 2860-2878. Oxford University Press, Brain, 140(11), 2860. Oxford University Press, Brain, 140, 2860-2878
Accession number :
edsair.doi.dedup.....e5b05b45c0ac8a968fd9e2a0ff4f1078