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Exome sequencing and network analysis identifies shared mechanisms underlying spinocerebellar ataxia
- Source :
- Brain, 140, 11, pp. 2860-2878, Brain, 140(11), 2860-2878. Oxford University Press, Brain, 140(11), 2860. Oxford University Press, Brain, 140, 2860-2878
- Publication Year :
- 2017
-
Abstract
- Item does not contain fulltext The autosomal dominant cerebellar ataxias, referred to as spinocerebellar ataxias in genetic nomenclature, are a rare group of progressive neurodegenerative disorders characterized by loss of balance and coordination. Despite the identification of numerous disease genes, a substantial number of cases still remain without a genetic diagnosis. Here, we report five novel spinocerebellar ataxia genes, FAT2, PLD3, KIF26B, EP300, and FAT1, identified through a combination of exome sequencing in genetically undiagnosed families and targeted resequencing of exome candidates in a cohort of singletons. We validated almost all genes genetically, assessed damaging effects of the gene variants in cell models and further consolidated a role for several of these genes in the aetiology of spinocerebellar ataxia through network analysis. Our work links spinocerebellar ataxia to alterations in synaptic transmission and transcription regulation, and identifies these as the main shared mechanisms underlying the genetically diverse spinocerebellar ataxia types.
- Subjects :
- 0301 basic medicine
MISSENSE MUTATIONS
Male
ALPHA-SYNUCLEIN
Gene regulatory network
POLYGLUTAMINE EXPANSIONS
Kinesins
whole exome sequencing
ACTIN DYNAMICS
0302 clinical medicine
spinocerebellar ataxia
MOTOR DYSFUNCTION
Chlorocebus aethiops
Missense mutation
Exome
Gene Regulatory Networks
Exome sequencing
Genetics
Reverse Transcriptase Polymerase Chain Reaction
EPISODIC ATAXIA
neurodegeneration
DOMINANT CEREBELLAR ATAXIAS
Kinesin
Cadherins
Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3]
Pedigree
CALCIUM-CHANNEL
COS Cells
Spinocerebellar ataxia
PROTOCADHERIN FAT1
Female
Sequence Analysis
Plasmids
congenital, hereditary, and neonatal diseases and abnormalities
Biology
Real-Time Polymerase Chain Reaction
Transfection
HUMAN CANCERS
Cercopithecus aethiops
03 medical and health sciences
Journal Article
medicine
Phospholipase D
synaptic transmission
Animals
Humans
Spinocerebellar Ataxias
EP300
Episodic ataxia
genetic network
DNA
Sequence Analysis, DNA
medicine.disease
nervous system diseases
030104 developmental biology
HEK293 Cells
nervous system
Neurology (clinical)
Candidate Disease Gene
E1A-Associated p300 Protein
030217 neurology & neurosurgery
Subjects
Details
- ISSN :
- 00068950
- Database :
- OpenAIRE
- Journal :
- Brain, 140, 11, pp. 2860-2878, Brain, 140(11), 2860-2878. Oxford University Press, Brain, 140(11), 2860. Oxford University Press, Brain, 140, 2860-2878
- Accession number :
- edsair.doi.dedup.....e5b05b45c0ac8a968fd9e2a0ff4f1078