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Structural constraints for the Crh protein from solid-state NMR experiments
- Source :
- Journal of Biomolecular Nmr, HAL, J Biomol NMR, J Biomol NMR, 2008, xxx, pp.239-250, Journal of Biomolecular NMR
- Publication Year :
- 2007
-
Abstract
- International audience; We demonstrate that short, medium and long-range constraints can be extracted from proton mediated, rare-spin detected correlation solid-state NMR experiments for the microcrystalline 10.4 x 2 kDa dimeric model protein Crh. Magnetization build-up curves from cross signals in NHHC and CHHC spectra deliver detailed information on side chain conformers and secondary structure for interactions between spin pairs. A large number of medium and long-range correlations can be observed in the spectra, and an analysis of the resolved signals reveals that the constraints cover the entire sequence, also including inter-monomer contacts between the two molecules forming the domain-swapped Crh dimer. Dynamic behavior is shown to have an impact on cross signals intensities, as indicated for mobile residues or regions by contacts predicted from the crystal structure, but absent in the spectra. Our work validates strategies involving proton distance measurements for large and complex proteins as the Crh dimer, and confirms the magnetization transfer properties previously described for small molecules in solid protein samples.We demonstrate that short, medium and long-range constraints can be extracted from proton mediated, rare-spin detected correlation solid-state NMR experiments for the microcrystalline 10.4 x 2 kDa dimeric model protein Crh. Magnetization build-up curves from cross signals in NHHC and CHHC spectra deliver detailed information on side chain conformers and secondary structure for interactions between spin pairs. A large number of medium and long-range correlations can be observed in the spectra, and an analysis of the resolved signals reveals that the constraints cover the entire sequence, also including inter-monomer contacts between the two molecules forming the domain-swapped Crh dimer. Dynamic behavior is shown to have an impact on cross signals intensities, as indicated for mobile residues or regions by contacts predicted from the crystal structure, but absent in the spectra. Our work validates strategies involving proton distance measurements for large and complex proteins as the Crh dimer, and confirms the magnetization transfer properties previously described for small molecules in solid protein samples.
- Subjects :
- Models, Molecular
Proton
Protein Conformation
Dimer
Catabolite repression histidine-containing phosphocarrier protein (Crh)
010402 general chemistry
01 natural sciences
Biochemistry
Article
Magnetization
chemistry.chemical_compound
Protein structure
Bacterial Proteins
[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology
[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology
Magnetization transfer
Solid-state NMR spectroscopy
Distance constraints
Protein secondary structure
Conformational isomerism
Nuclear Magnetic Resonance, Biomolecular
Spectroscopy
010405 organic chemistry
Phosphoproteins
0104 chemical sciences
Crystallography
MAS
Solid-state nuclear magnetic resonance
chemistry
3D Protein structure
Protons
Dimerization
Subjects
Details
- ISSN :
- 09252738
- Volume :
- 40
- Issue :
- 4
- Database :
- OpenAIRE
- Journal :
- Journal of biomolecular NMR
- Accession number :
- edsair.doi.dedup.....e3242fd21f2e6aa635cf895c3ceeffd9