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Transcriptomic data of pre-meiotic stage of floret development in apomictic and sexual types of guinea grass (Panicum maximum Jacq.)
- Source :
- Data in Brief, Data in Brief, Vol 18, Iss, Pp 590-593 (2018)
- Publication Year :
- 2018
- Publisher :
- Elsevier BV, 2018.
-
Abstract
- Guinea grass (Panicum maximum Jacq), an important fodder crop of humid and sub-humid tropical regions, reproduces through apomixis, a method of clonal propagation through seeds. Lack of knowledge of the genetic and molecular control of this phenomena has hindered the genetic improvement of this crop. The dataset provided here represents the first RNA-Seq based assembly and analysis of florets at pre-meiotic stage from the apomictic and sexual genotypes of guinea grass. The raw sequence files in FASTQ format were deposited in the NCBI SRA database with accession number SRP115883. A total of 24.8 Gb raw sequence data, corresponding to 17,96,65,827 raw reads was obtained by paired end sequencing. We used Trinity for de-novo assembly and identified 57,647 transcripts in sexual and 49,093 transcripts in apomictic type. This transcriptome data will be useful for identification and comparative analysis of genes regulating the mode of reproduction in grasses. Keywords: Florets, Pre-meiosis, Apomixis, RNA-Seq, Panicum maximum
- Subjects :
- 0106 biological sciences
0301 basic medicine
FASTQ format
RNA-Seq
Biology
lcsh:Computer applications to medicine. Medical informatics
01 natural sciences
Crop
03 medical and health sciences
Meiosis
Apomixis
Botany
lcsh:Science (General)
Panicum maximum
Paired-end tag
Genetics, Genomics and Molecular Biology
Multidisciplinary
Accession number (library science)
food and beverages
biology.organism_classification
Florets
030104 developmental biology
lcsh:R858-859.7
Panicum
lcsh:Q1-390
Pre-meiosis
010606 plant biology & botany
Subjects
Details
- ISSN :
- 23523409
- Volume :
- 18
- Database :
- OpenAIRE
- Journal :
- Data in Brief
- Accession number :
- edsair.doi.dedup.....e0dc4fcbe0de99b0b60249e85efc44d6