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Faithful estimation of dynamics parameters from CPMG relaxation dispersion measurements
- Source :
- Journal of magnetic resonance (San Diego, Calif. : 1997). 180(1)
- Publication Year :
- 2005
-
Abstract
- This work examines the robustness of fitting of parameters describing conformational exchange (k(ex), p(a/b), and Deltaomega) processes from CPMG relaxation dispersion data. We have analyzed the equations describing conformational exchange processes for the intrinsic inter-dependence of their parameters that leads to the existence of multiple equivalent solutions, which equally satisfy the experimental data. We have used Monte-Carlo simulations and fitting to the synthetic data sets as well as the direct 3-D mapping of the parameter space of k(ex), p(a/b), and Deltaomega to quantitatively assess the degree of the parameter inter-dependence. The demonstrated high correlation between parameters can preclude accurate dynamics parameter estimation from NMR spin-relaxation data obtained at a single static magnetic field. The strong parameter inter-dependence can readily be overcome through acquisition of spin-relaxation data at more than one static magnetic field thereby allowing accurate assessment of conformational exchange properties.
- Subjects :
- Models, Molecular
Nuclear and High Energy Physics
Work (thermodynamics)
Models, Statistical
Estimation theory
Chemistry
Protein Conformation
Protein dynamics
Relaxation (NMR)
Biophysics
Proteins
Parameter space
Condensed Matter Physics
Magnetostatics
Biochemistry
Nuclear magnetic resonance
Robustness (computer science)
Dispersion (optics)
Statistical physics
Nuclear Magnetic Resonance, Biomolecular
Algorithms
Subjects
Details
- ISSN :
- 10907807
- Volume :
- 180
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Journal of magnetic resonance (San Diego, Calif. : 1997)
- Accession number :
- edsair.doi.dedup.....dfd1c4d3f34d2a4b23faa070a73c0cc5