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Mycobacterium tuberculosis FasR senses long fatty acyl-CoA through a tunnel and a hydrophobic transmission spine

Authors :
Marisa M. Fernández
Felipe Trajtenberg
Hugo Gramajo
Lautaro Diacovich
Nicole Larrieux
Gabriela Gago
Julia Lara
Emilio L. Malchiodi
Alejandro Buschiazzo
Universidad Nacional de Rosario [Santa Fe]
Plataforma de Biología Estructural y Metabolómica [Rosario] (PLABEM)
Molecular and structural microbiology / Microbiología Molecular y Estructural [Montevideo]
Institut Pasteur de Montevideo
Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)
Universidad de Buenos Aires [Buenos Aires] (UBA)
Integrative Microbiology of Zoonotic Agents [Paris and Montevideo] (IMiZA)
Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut Pasteur [Paris]
J.L. traineeships at IPasteur-Montevideo were funded by CeBEM. Support to A.B. from Institut Pasteur (grant 761-International_Joint_Research_Unit-IMiZA-2016), to G.G. from ANPCyT (grant PICT 2015-0796) and to H.G. from ANPCyT (grants PICT 2012-0168 and 2022) and NIH (grant 1R01AI095183-01) are acknowledged.
We thank Stanislas Leibler, Michael Mitchell and Pablo Sartori for sharing initial strain analysis scripts
Matias Machado for assistance in molecular dynamics
Frank Lehmann for initial cloning efforts
Sebastian Klinke (Fundación Leloir) and the staff at Proxima 1 beamline (Soleil synchrotron) and at I04-1 beamline (Diamond synchrotron) for assistance with data collection. We acknowledge computational and storage services (TARS cluster) provided by the Institut Pasteur IT Dept (Paris). We thank the CCP4/CeBEM Macromolecular Crystallography School (USP@São Carlos, 2018), especially Isabel Usón and Paul Emsley for helping us, respectively, with ShelxE and Coot, in dealing with low-resolution density modification and model building.
Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut Pasteur [Paris] (IP)
Source :
Nature Communications, Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.3703. ⟨10.1038/s41467-020-17504-x⟩, Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020), Nature Communications, 2020, 11 (1), pp.3703. ⟨10.1038/s41467-020-17504-x⟩
Publication Year :
2020
Publisher :
HAL CCSD, 2020.

Abstract

Mycobacterium tuberculosis is a pathogen with a unique cell envelope including very long fatty acids, implicated in bacterial resistance and host immune modulation. FasR is a TetR-like transcriptional activator that plays a central role in sensing mycobacterial long-chain fatty acids and regulating lipid biosynthesis. Here we disclose crystal structures of M. tuberculosis FasR in complex with acyl effector ligands and with DNA, uncovering its molecular sensory and switching mechanisms. A long tunnel traverses the entire effector-binding domain, enabling long fatty acyl effectors to bind. Only when the tunnel is entirely occupied, the protein dimer adopts a rigid configuration with its DNA-binding domains in an open state, leading to DNA dissociation. The protein-folding hydrophobic core connects the two domains, and is completed into a continuous spine when the effector binds. Such a transmission spine is conserved in a large number of TetR-like regulators, offering insight into effector-triggered allosteric functional control.<br />FasR is a TetR-like transcriptional activator that plays a central role in sensing mycobacterial long-chain fatty acids and regulating lipid biosynthesis in Mycobacterium tuberculosis. Here authors present crystal structures of M. tuberculosis FasR in complex with acyl effector ligands and with DNA, uncovering its molecular sensory and switching mechanisms.

Details

Language :
English
ISSN :
20411723
Database :
OpenAIRE
Journal :
Nature Communications, Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.3703. ⟨10.1038/s41467-020-17504-x⟩, Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020), Nature Communications, 2020, 11 (1), pp.3703. ⟨10.1038/s41467-020-17504-x⟩
Accession number :
edsair.doi.dedup.....df0c9ff504288d18e5194304c77d818d