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Involvement of Essential Signaling Cascades and Analysis of Gene Networks in Diabesity
- Source :
- Genes, Volume 11, Issue 11, Genes, Vol 11, Iss 1256, p 1256 (2020)
- Publication Year :
- 2020
-
Abstract
- (1) Aims: Diabesity, defined as diabetes occurring in the context of obesity, is a serious health problem that is associated with an increased risk of premature heart attack, stroke, and death. To date, a key challenge has been to understand the molecular pathways that play significant roles in diabesity. In this study, we aimed to investigate the genetic links between diabetes and obesity in diabetic individuals and highlight the role(s) of shared genes in individuals with diabesity. (2) Methods: The interactions between the genes were analyzed using the Search Tool for the Retrieval of Interacting Genes (STRING) tool after the compilation of obesity genes associated with type 1 diabetes (T1D), type 2 diabetes (T2D), and maturity-onset diabetes of the young (MODY). Cytoscape plugins were utilized for enrichment analysis. (3) Results: We identified 546 obesity genes that are associated with T1D, T2D, and MODY. The network backbone of the identified genes comprised 514 nodes and 4126 edges with an estimated clustering coefficient of 0.242. The Molecular Complex Detection (MCODE) generated three clusters with a score of 33.61, 16.788, and 6.783, each. The highest-scoring nodes of the clusters were , , and genes. The genes from cluster 1 were enriched in FOXO-mediated transcription of oxidative stress, renin secretion, and regulation of lipolysis in adipocytes. The cluster 2 genes enriched in Src homology 2 domain-containing (SHC)-related events triggered by , regulation of lipolysis in adipocytes, and GRB2: SOS produce a link to mitogen-activated protein kinase (MAPK) signaling for integrins. The cluster 3 genes ere enriched in IGF1R signaling cascade and insulin signaling pathway. (4) Conclusion: This study presents a platform to discover potential targets for diabesity treatment and helps in understanding the molecular mechanism. The APC was funded by Qatar University Internal Grant number [QUST-2-CHS-2020-12]
- Subjects :
- 0301 basic medicine
obesity
lcsh:QH426-470
Lipolysis
Gene regulatory network
Angiotensinogen
Computational biology
Type 2 diabetes
Biology
Homology (biology)
Article
Protein–protein interaction
Receptor, IGF Type 1
protein-protein interaction
03 medical and health sciences
0302 clinical medicine
Diabetes mellitus
Renin
Genetics
medicine
Adipocytes
Gene Regulatory Networks
T2D
Gene
Genetics (clinical)
Insulin-like growth factor 1 receptor
Type 1 diabetes
diabetes
Fibrinogen
medicine.disease
lcsh:Genetics
Oxidative Stress
030104 developmental biology
Diabetes Mellitus, Type 1
Diabetes Mellitus, Type 2
Receptors, LDL
Shc Signaling Adaptor Proteins
030220 oncology & carcinogenesis
MODY
diabesity
T1D
Subjects
Details
- ISSN :
- 20734425
- Volume :
- 11
- Issue :
- 11
- Database :
- OpenAIRE
- Journal :
- Genes
- Accession number :
- edsair.doi.dedup.....dedf6fa3db2b0a2bd21ef13b90f2053e