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Statics and dynamics of condensed DNA within phages and globules
- Source :
- Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences. 362:1497-1517
- Publication Year :
- 2004
- Publisher :
- The Royal Society, 2004.
-
Abstract
- Several controversial issues concerning the packing of linear DNA in bacteriophages and globules are discussed. Exact relations for the osmotic pressure, capsid pressure and loading force are derived in terms of the hole size inside phages under the assumption that the DNA globule has a uniform density. A new electrostatic model is introduced for computing the osmotic pressure of rodlike polyelectrolytes at very high concentrations. At intermediate packing, a reptation model is considered for DNA diffusing within a toroidal globule. Under tight packing conditions, a model of Coulomb sliding friction is proposed. A general discussion is given of our current understanding of the statics and dynamics of confined DNA in the context of to the following experiments: characterization of the liquid crystalline phases, X-ray scattering by phages, osmotic stress measurements, cyclization within globules and single-molecule determination ofthe loading forces.<br />Comment: 32 pages, 5 figures, submitted to Phil.Trans.Roy.Soc.A ; special issue entitled "Mechanics of DNA", editor J.M.T.Thompson
- Subjects :
- Models, Molecular
Materials science
General Mathematics
Molecular Sequence Data
FOS: Physical sciences
General Physics and Astronomy
Context (language use)
Condensed Matter - Soft Condensed Matter
Nucleic Acid Denaturation
Quantitative Biology::Subcellular Processes
Motion
Structure-Activity Relationship
Capsid
Osmotic Pressure
Coulomb
Osmotic pressure
Bacteriophages
Computer Simulation
Statics
Quantitative Biology::Biomolecules
Toroid
Base Sequence
Scattering
General Engineering
DNA
Elasticity
Polyelectrolyte
Quantitative Biology
Condensed Matter::Soft Condensed Matter
Kinetics
Reptation
Torque
Chemical physics
FOS: Biological sciences
Nucleic Acid Conformation
Soft Condensed Matter (cond-mat.soft)
Stress, Mechanical
Quantitative Biology (q-bio)
Subjects
Details
- ISSN :
- 14712962 and 1364503X
- Volume :
- 362
- Database :
- OpenAIRE
- Journal :
- Philosophical Transactions of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences
- Accession number :
- edsair.doi.dedup.....db386c3ab367e333124e11390200fbe4
- Full Text :
- https://doi.org/10.1098/rsta.2004.1385