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Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
- Source :
- Journal of Cellular and Molecular Medicine
- Publication Year :
- 2019
- Publisher :
- Wiley, 2019.
-
Abstract
- Long non‐coding RNAs (lncRNAs) are a subclass of non‐protein coding transcripts that are involved in several regulatory processes and are considered as potential biomarkers for almost all cancer types. This study aims to investigate the prognostic value of lncRNAs for lung adenocarcinoma (LUAD), the most prevalent subtype of lung cancer. To this end, the processed data of The Cancer Genome Atlas LUAD were retrieved from GEPIA and circlncRNAnet databases, matched with each other and integrated with the analysis results of a non‐small cell lung cancer plasma RNA‐Seq study. Then, the data were filtered in order to separate the differentially expressed lncRNAs that have a prognostic value for LUAD. Finally, the selected lncRNAs were functionally annotated using a bioinformatic and systems biology approach. Accordingly, we identified 19 lncRNAs as the novel LUAD prognostic lncRNAs. Also, based on our results, all 19 lncRNAs might be involved in lung cancer‐related biological processes. Overall, we suggested several novel biomarkers and drug targets which could help early diagnosis, prognosis and treatment of LUAD patients.
- Subjects :
- Male
0301 basic medicine
prognostic lncRNAs
Lung Neoplasms
Systems biology
Adenocarcinoma of Lung
Computational biology
Biology
Subclass
03 medical and health sciences
0302 clinical medicine
Biomarkers, Tumor
medicine
Humans
Gene Regulatory Networks
Lung cancer
Survival analysis
Gene Library
Lung
Smoking
systems biology
Molecular Sequence Annotation
Original Articles
bioinformatics
Cell Biology
functional annotation
lung adenocarcinoma
Prognosis
medicine.disease
Survival Analysis
Gene Expression Regulation, Neoplastic
Gene Ontology
030104 developmental biology
medicine.anatomical_structure
Functional annotation
030220 oncology & carcinogenesis
Potential biomarkers
Molecular Medicine
Adenocarcinoma
Original Article
Female
RNA, Long Noncoding
Subjects
Details
- ISSN :
- 15824934 and 15821838
- Volume :
- 23
- Database :
- OpenAIRE
- Journal :
- Journal of Cellular and Molecular Medicine
- Accession number :
- edsair.doi.dedup.....db32d08568cfbe13e882e824a2b8fe93