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Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia
- Source :
- PLoS ONE, PLoS ONE, Public Library of Science, 2019, 14 (6), pp.e0209632. ⟨10.1371/journal.pone.0209632⟩, Plos One 6 (14), e0209632. (2019), PLoS ONE, Vol 14, Iss 6, p e0209632 (2019)
- Publication Year :
- 2019
- Publisher :
- HAL CCSD, 2019.
-
Abstract
- International audience; Genomic regions subjected to selection frequently show signatures such as within-population reduced nucleotide diversity and outlier values of differentiation among differentially selected populations. In this study, we analyzed 50K SNP genotype data of 373 animals belonging to 23 sheep breeds of different geographic origins using the Rsb (extended haplotype homozygosity) and FST statistical approaches, to identify loci associated with the fat-tail phenotype. We also checked if these putative selection signatures overlapped with regions of high-homozygosity (ROH). The analyses identified novel signals and confirmed the presence of selection signature in genomic regions that harbor candidate genes known to affect fat deposition. Several genomic regions that frequently appeared in ROH were also identified within each breed, but only two ROH islands overlapped with the putative selection signatures. The results reported herein provide the most complete genome-wide study of selection signatures for fat-tail in African and Eurasian sheep breeds; they also contribute insights into the genetic basis for the fat tail phenotype in sheep, and confirm the great complexity of the mechanisms that underlie quantitative traits, such as the fat-tail.
- Subjects :
- 0301 basic medicine
Candidate gene
Topography
European People
Heredity
[SDV]Life Sciences [q-bio]
Social Sciences
Genome-wide association study
Breeding
Biochemistry
Homozygosity
Nucleotide diversity
Fats
Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico
Cell Signaling
Genotype
Psychology
Ethnicities
Body Fat Distribution
2. Zero hunger
Mammals
Islands
sheep, fat tail, SNP, selection sigantures, candidate genes
Multidisciplinary
Animal Behavior
Homozygote
Eukaryota
Single Nucleotide
04 agricultural and veterinary sciences
Ruminants
Phenotype
Lipids
Breed
Italian People
Africa
Animals
Asia
Genome-Wide Association Study
Polymorphism, Single Nucleotide
Sheep
Selection, Genetic
Vertebrates
Medicine
Genomic Signal Processing
Research Article
Signal Transduction
Science
Single-nucleotide polymorphism
Genomics
Quantitative trait locus
Biology
Animal Sexual Behavior
Molecular Genetics
03 medical and health sciences
Genetic
Genetics
SNP
Polymorphism
Selection
Molecular Biology
Selection (genetic algorithm)
Behavior
Landforms
0402 animal and dairy science
Organisms
Biology and Life Sciences
Geomorphology
Cell Biology
040201 dairy & animal science
030104 developmental biology
Evolutionary biology
Amniotes
People and Places
Earth Sciences
Population Groupings
Zoology
Subjects
Details
- Language :
- English
- ISSN :
- 19326203
- Database :
- OpenAIRE
- Journal :
- PLoS ONE, PLoS ONE, Public Library of Science, 2019, 14 (6), pp.e0209632. ⟨10.1371/journal.pone.0209632⟩, Plos One 6 (14), e0209632. (2019), PLoS ONE, Vol 14, Iss 6, p e0209632 (2019)
- Accession number :
- edsair.doi.dedup.....d7a4991a41be962ed747900f45fbd45b
- Full Text :
- https://doi.org/10.1371/journal.pone.0209632⟩