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Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia

Authors :
Abulgasim Ahbara
Elena Ciani
Baldassare Portolano
Anne Da Silva
Salvatore Mastrangelo
Faisal Almathen
Ibrahim Belabdi
Olivier Hanotte
B. Moioli
Hussain Bahbahani
Fabio Pilla
Joram M. Mwacharo
Mohammed Al Abri
University of Palermo
Department of Biological Sciences, Faculty of Science
King Abdulaziz University
Consiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria (CREA)
University Park
Misurata University
Sultan Qaboos University (SQU)
King Faisal University - College of Agriculture and Food Sciences
King Faisal University (KFU)
Génomique AniMale, Amélioration, Adaptation (GAMAA)
PEIRENE (PEIRENE)
Institut Génomique, Environnement, Immunité, Santé, Thérapeutique (GEIST)
Université de Limoges (UNILIM)-Université de Limoges (UNILIM)-Institut Génomique, Environnement, Immunité, Santé, Thérapeutique (GEIST)
Université de Limoges (UNILIM)-Université de Limoges (UNILIM)-Institut National de la Recherche Agronomique (INRA)
Université de Saâd Dahlab [Blida] (USDB )
International Center for Agricultural Research in the Dry Areas [Jordanie] (ICARDA)
Università degli Studi del Molise (Unimol)
Università degli Studi di Bari Aldo Moro
Mastrangelo S.
Bahbahani H.
Moioli B.
Ahbara A.
Al Abri M.
Almathen F.
Da Silva A.
Belabdi I.
Portolano B.
Mwacharo J.M.
Hanotte O.
Pilla F.
Ciani E.
Source :
PLoS ONE, PLoS ONE, Public Library of Science, 2019, 14 (6), pp.e0209632. ⟨10.1371/journal.pone.0209632⟩, Plos One 6 (14), e0209632. (2019), PLoS ONE, Vol 14, Iss 6, p e0209632 (2019)
Publication Year :
2019
Publisher :
HAL CCSD, 2019.

Abstract

International audience; Genomic regions subjected to selection frequently show signatures such as within-population reduced nucleotide diversity and outlier values of differentiation among differentially selected populations. In this study, we analyzed 50K SNP genotype data of 373 animals belonging to 23 sheep breeds of different geographic origins using the Rsb (extended haplotype homozygosity) and FST statistical approaches, to identify loci associated with the fat-tail phenotype. We also checked if these putative selection signatures overlapped with regions of high-homozygosity (ROH). The analyses identified novel signals and confirmed the presence of selection signature in genomic regions that harbor candidate genes known to affect fat deposition. Several genomic regions that frequently appeared in ROH were also identified within each breed, but only two ROH islands overlapped with the putative selection signatures. The results reported herein provide the most complete genome-wide study of selection signatures for fat-tail in African and Eurasian sheep breeds; they also contribute insights into the genetic basis for the fat tail phenotype in sheep, and confirm the great complexity of the mechanisms that underlie quantitative traits, such as the fat-tail.

Details

Language :
English
ISSN :
19326203
Database :
OpenAIRE
Journal :
PLoS ONE, PLoS ONE, Public Library of Science, 2019, 14 (6), pp.e0209632. ⟨10.1371/journal.pone.0209632⟩, Plos One 6 (14), e0209632. (2019), PLoS ONE, Vol 14, Iss 6, p e0209632 (2019)
Accession number :
edsair.doi.dedup.....d7a4991a41be962ed747900f45fbd45b
Full Text :
https://doi.org/10.1371/journal.pone.0209632⟩