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Identification of Novel Chemical Entities for Adenosine Receptor Type 2A Using Molecular Modeling Approaches

Authors :
Rosivaldo S. Borges
Luciane B. Silva
Jorddy Neves Cruz
Sirlene S. B. Ota
Kelton L. B. Santos
Franco Henrique Andrade Leite
Moysés Fagundes de Araújo Neto
Carlos Henrique Tomich de Paula da Silva
Ryan da Silva Ramos
Joaquín M. Campos
Cleison C. Lobato
Cleydson B. R. Santos
[Dos Santos,KLB
Cruz,JN
Silva,LB
Ramos,RS
Lobato,CC
Borges,RS
Santos,CBR] Laboratory of Modeling and Computational Chemistry, Department of Biological and Health Sciences, Federal University of Amapá, Macapá-AP, Brazil. [Dos Santos,KLB
Ota,SSB
Santos,CBR] Nucleus of Studies and Selection of Bioactive Molecules, Institute of Health Sciences, Federal University of Pará, Belém-PA, Brazil. [Neto,MFA
Leite,FHA
] Laboratory of Molecular Modeling, State University of Feira de Santana, Feira de Santana, Bahia, Brazil. [da SIlva,CHTP] Computational Laboratory of Pharmaceutical Chemistry, University of São Paulo, Ribeirão Preto-SP, Brazil. [da SIlva,CHTP] Department of Chemistry, Faculty of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo, Ribeirão Preto-SP, Brazil. [Campos,JM] Department of Pharmaceutical and Organic Chemistry, Faculty of Pharmacy, Institute of Biosanitary, Research ibs. Granada, University of Granada, Granada, Spain.
Source :
Molecules, Volume 25, Issue 5, Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP, Molecules, Vol 25, Iss 5, p 1245 (2020), Digibug. Repositorio Institucional de la Universidad de Granada, instname
Publication Year :
2020
Publisher :
MDPI, 2020.

Abstract

Adenosine Receptor Type 2A (A2AAR) plays a role in important processes, such as anti-inflammatory ones. In this way, the present work aimed to search for compounds by pharmacophore-based virtual screening. The pharmacokinetic/toxicological profiles of the compounds, as well as a robust QSAR, predicted the binding modes via molecular docking. Finally, we used molecular dynamics to investigate the stability of interactions from ligand-A2AAR. For the search for A2AAR agonists, the UK-432097 and a set of 20 compounds available in the BindingDB database were studied. These compounds were used to generate pharmacophore models. Molecular properties were used for construction of the QSAR model by multiple linear regression for the prediction of biological activity. The best pharmacophore model was used by searching for commercial compounds in databases and the resulting compounds from the pharmacophore-based virtual screening were applied to the QSAR. Two compounds had promising activity due to their satisfactory pharmacokinetic/toxicological profiles and predictions via QSAR (Diverset 10002403 pEC50 = 7.54407; ZINC04257548 pEC50 = 7.38310). Moreover, they had satisfactory docking and molecular dynamics results compared to those obtained for Regadenoson (Lexiscan®), used as the positive control. These compounds can be used in biological assays (in vitro and in vivo) in order to confirm the potential activity agonist to A2AAR<br />PROPESP/UFPA<br />National Council for Scientific and Technological Development (CNPq)

Subjects

Subjects :
Adenosine
Molecular model
Pharmaceutical Science
Quantitative Structure-Activity Relationship
Relación estructura-actividad cuantitativa
Ligands
Chemicals and Drugs::Chemical Actions and Uses::Specialty Uses of Chemicals::Laboratory Chemicals::Ligands [Medical Subject Headings]
Analytical Chemistry
Phenomena and Processes::Chemical Phenomena::Biochemical Phenomena::Structure-Activity Relationship::Quantitative Structure-Activity Relationship [Medical Subject Headings]
Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings]
Molecular dynamics
Simulación del acoplamiento molecular
Drug Discovery
Agonistas del receptor de adenosina A2
0303 health sciences
Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Models, Theoretical::Models, Molecular::Molecular Dynamics Simulation [Medical Subject Headings]
Chemistry
Biological activity
Chemicals and Drugs::Heterocyclic Compounds::Heterocyclic Compounds, 2-Ring::Purines::Purine Nucleosides::Adenosine [Medical Subject Headings]
Molecular Docking Simulation
INDÚSTRIA FARMACÊUTICA
Cribado sistemático
Chemistry (miscellaneous)
Molecular Medicine
BindingDB
Pharmacophore
Virtual screening
Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Membrane Proteins::Receptors, Cell Surface::Receptors, Purinergic::Receptors, Purinergic P1::Receptors, Adenosine A2 [Medical Subject Headings]
Quantitative structure–activity relationship
Adenosine A2 Receptor Agonists
030303 biophysics
Computational biology
Adenosine A2A receptor
Molecular Dynamics Simulation
Article
Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Models, Theoretical::Models, Molecular::Molecular Docking Simulation [Medical Subject Headings]
Chemicals and Drugs::Chemical Actions and Uses::Pharmacologic Actions::Molecular Mechanisms of Pharmacological Action::Neurotransmitter Agents::Purinergic Agents::Purinergic Agonists::Purinergic P1 Receptor Agonists::Adenosine A2 Receptor Agonists [Medical Subject Headings]
lcsh:QD241-441
03 medical and health sciences
lcsh:Organic chemistry
Molecular insight
Humans
Physical and Theoretical Chemistry
030304 developmental biology
Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Membrane Proteins::Receptors, Cell Surface::Receptors, Purinergic::Receptors, Purinergic P1 [Medical Subject Headings]
adenosine A2A receptor
Receptors, Adenosine A2
Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Models, Theoretical::Models, Statistical::Linear Models [Medical Subject Headings]
Organic Chemistry
virtual screening
Simulación de Dinámica Molecular
Docking (molecular)
molecular insight

Details

Language :
English
Database :
OpenAIRE
Journal :
Molecules, Volume 25, Issue 5, Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP, Molecules, Vol 25, Iss 5, p 1245 (2020), Digibug. Repositorio Institucional de la Universidad de Granada, instname
Accession number :
edsair.doi.dedup.....d76f470392d39889753e07fcacdf898a