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XMAn v2—a database of Homo sapiens mutated peptides
- Source :
- Bioinformatics
- Publication Year :
- 2019
- Publisher :
- Oxford University Press, 2019.
-
Abstract
- Summary The ‘Unknown Mutation Analysis (XMAn)’ database is a compilation of Homo sapiens mutated peptides in FASTA format, that was constructed for facilitating the identification of protein sequence alterations by tandem mass spectrometry detection. The database comprises 2 539 031 non-redundant mutated entries from 17 599 proteins, of which 2 377 103 are missense and 161 928 are nonsense mutations. It can be used in conjunction with search engines that seek the identification of peptide amino acid sequences by matching experimental tandem mass spectrometry data to theoretical sequences from a database. Availability and implementation XMAn v2 can be accessed from github.com/lazarlab/XMAnv2. Supplementary information Supplementary data are available at Bioinformatics online.
- Subjects :
- Statistics and Probability
Databases, Factual
Nonsense mutation
Biology
computer.software_genre
Tandem mass spectrometry
Biochemistry
03 medical and health sciences
0302 clinical medicine
Protein sequencing
Tandem Mass Spectrometry
Missense mutation
Humans
Amino Acid Sequence
Databases, Protein
Molecular Biology
Peptide sequence
030304 developmental biology
0303 health sciences
Database
FASTA format
Proteins
Applications Notes
Computer Science Applications
Computational Mathematics
Computational Theory and Mathematics
Homo sapiens
Mutation testing
Peptides
computer
030217 neurology & neurosurgery
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Bioinformatics
- Accession number :
- edsair.doi.dedup.....d63d6b46d1eea6945d7aab25ea11d2b1