Back to Search
Start Over
A Novel Approach to Data Collection for Difficult Structures: Data Management for Large Numbers of Crystals with the BLEND Software
- Source :
- Crystals; Volume 7; Issue 8; Pages: 242, Crystals, Crystals, Vol 7, Iss 8, p 242 (2017)
- Publication Year :
- 2017
- Publisher :
- Multidisciplinary Digital Publishing Institute, 2017.
-
Abstract
- The present article describes how to use the computer program BLEND to help assemble complete datasets for the solution of macromolecular structures, starting from partial or complete datasets, derived from data collection from multiple crystals. The program is demonstrated on more than two hundred X-ray diffraction datasets obtained from 50 crystals of a complex formed between the SRF transcription factor, its cognate DNA, and a peptide from the SRF cofactor MRTF-A. This structure is currently in the process of being fully solved. While full details of the structure are not yet available, the repeated application of BLEND on data from this structure, as they have become available, has made it possible to produce electron density maps clear enough to visualise the potential location of MRTF sequences.
- Subjects :
- 0301 basic medicine
Materials science
General Chemical Engineering
Data management
Nanotechnology
BLEND
multiple crystals
hierarchical cluster analysis
protein-protein-DNA complex
bcs
010402 general chemistry
01 natural sciences
Article
Computational science
Inorganic Chemistry
03 medical and health sciences
Software
lcsh:QD901-999
General Materials Science
Biological sciences
Structure (mathematical logic)
Data collection
Computer program
business.industry
Process (computing)
Condensed Matter Physics
0104 chemical sciences
Hierarchical clustering
030104 developmental biology
lcsh:Crystallography
business
Subjects
Details
- Language :
- English
- ISSN :
- 20734352
- Database :
- OpenAIRE
- Journal :
- Crystals; Volume 7; Issue 8; Pages: 242
- Accession number :
- edsair.doi.dedup.....d6289ca195f8350bf19ae5e7f68e2b3a
- Full Text :
- https://doi.org/10.3390/cryst7080242