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The complete S RNA and M RNA nucleotide sequences of a hippeastrum chlorotic ringspot virus (HCRV) isolate from Hymenocallis littoralis (Jacq.) Salisb in China
- Source :
- Archives of Virology. 158:2597-2601
- Publication Year :
- 2013
- Publisher :
- Springer Science and Business Media LLC, 2013.
-
Abstract
- An isolate of hippeastrum chlorotic ringspot virus (HCRV) named HLS1-2, causing necrotic spots on leaves of spider lily, was obtained and characterized in China. The complete S RNA and M RNAs of the HLS1-2 isolate are 2724 nt and 4741 nt in length, respectively. The HLS1-2 S RNA sequence is most closely related to that of HCRV, with 99 % identity. Viral proteins encoded by the M RNA are closely related to those of tomato yellow ring virus (TYRV), polygonum ringspot virus (PolRSV) and iris yellow spot virus (IYSV). Phylogenetic trees for the four viral proteins encoded by the S and M RNAs placed HCRV-HLS1-2 in a distinct cluster with IYSV, TYRV and PolRSV and provided further support for the subdivision of tospoviruses into American and Eurasian groups.
- Subjects :
- China
Sequence analysis
Molecular Sequence Data
Sequence Homology
Genome, Viral
Virus
chemistry.chemical_compound
Tospovirus
Phylogenetics
Virology
Liliaceae
Cluster Analysis
Hymenocallis littoralis
Phylogeny
Plant Diseases
Spots
biology
Phylogenetic tree
RNA
Sequence Analysis, DNA
General Medicine
biology.organism_classification
chemistry
RNA, Viral
DNA
Subjects
Details
- ISSN :
- 14328798 and 03048608
- Volume :
- 158
- Database :
- OpenAIRE
- Journal :
- Archives of Virology
- Accession number :
- edsair.doi.dedup.....d267ab519d4709490da4ed5c49da2fed