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Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards

Authors :
Mesude Bicak
Catherine Borremans
S. Dekeyzer
Simon Claus
Stephane Pesant
Renzo Kottmann
Anna Kopf
Guy Cochrane
Dick Ma Schaap
Chris Bowler
Klaas Deneudt
Frank Oliver Glöckner
Petra ten Hoopen
Peter Thijsse
Source :
Standards in Genomic Sciences, Standards In Genomic Sciences (1944-3277) (Biomed Central Ltd), 2015-05, Vol. 10, N. 20, P. 1-10
Publication Year :
2015
Publisher :
Springer Science and Business Media LLC, 2015.

Abstract

Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving” data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be discovered and explored in data repositories. The M2B3 Standards were developed by the European project Micro B3, funded under 7th Framework Programme “Ocean of Tomorrow”, and were first used with the Ocean Sampling Day initiative. We believe that these standards have value in broader marine science

Details

ISSN :
19443277
Volume :
10
Database :
OpenAIRE
Journal :
Standards in Genomic Sciences
Accession number :
edsair.doi.dedup.....d2676ea2bd503e21e70e350419cdf876
Full Text :
https://doi.org/10.1186/s40793-015-0001-5