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Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism
- Source :
- Acta crystallographica. Section F, Structural biology and crystallization communications, vol 66, iss Pt 10, Acta Crystallographica Section F: Structural Biology and Crystallization Communications
- Publication Year :
- 2010
- Publisher :
- eScholarship, University of California, 2010.
-
Abstract
- Structures of the first representatives of PF06684 (DUF1185) reveal a Bacillus chorismate mutase-like fold with a potential role in amino-acid synthesis.<br />The crystal structures of BB2672 and SPO0826 were determined to resolutions of 1.7 and 2.1 Å by single-wavelength anomalous dispersion and multiple-wavelength anomalous dispersion, respectively, using the semi-automated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). These proteins are the first structural representatives of the PF06684 (DUF1185) Pfam family. Structural analysis revealed that both structures adopt a variant of the Bacillus chorismate mutase fold (BCM). The biological unit of both proteins is a hexamer and analysis of homologs indicates that the oligomer interface residues are highly conserved. The conformation of the critical regions for oligomerization appears to be dependent on pH or salt concentration, suggesting that this protein might be subject to environmental regulation. Structural similarities to BCM and genome-context analysis suggest a function in amino-acid synthesis.
- Subjects :
- Models, Molecular
Protein Folding
Domains of Unknown Function
chorismate mutase
Bacillus
Random hexamer
Crystallography, X-Ray
Biochemistry
domain of unknown function
Structural Biology
Models
2.1 Biological and endogenous factors
Rhodobacteraceae
Amino Acids
Aetiology
Peptide sequence
chemistry.chemical_classification
0303 health sciences
Crystallography
030302 biochemistry & molecular biology
Biological Sciences
Condensed Matter Physics
Amino acid
Chorismate mutase
Protein folding
Domain of unknown function
Protein Structure Initiative
Protein Structure
Molecular Sequence Data
Biophysics
Biology
Bordetella bronchiseptica
Structural genomics
Quaternary
03 medical and health sciences
Genetics
Amino Acid Sequence
Protein Structure, Quaternary
030304 developmental biology
Structural Homology
amino acids
Protein
fungi
salt-dependent
Molecular
structural genomics
Protein Structure, Tertiary
chemistry
Structural Homology, Protein
Chemical Sciences
X-Ray
Generic health relevance
pH-dependent
Tertiary
Chorismate Mutase
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- Acta crystallographica. Section F, Structural biology and crystallization communications, vol 66, iss Pt 10, Acta Crystallographica Section F: Structural Biology and Crystallization Communications
- Accession number :
- edsair.doi.dedup.....d261a4239ffea9fcc0956dd9c1a34aae