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Correction to: Functional analysis of suspected splicing variants in CLCN5 gene in Dent disease 1
- Source :
- Clinical and Experimental Nephrology
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- In recent years, the elucidation of splicing abnormalities as a cause of hereditary diseases has progressed. However, there are no comprehensive reports of suspected splicing variants in the CLCN5 gene in Dent disease cases. We reproduced gene mutations by mutagenesis, inserted the mutated genes into minigene vectors, and investigated the pathogenicity and onset mechanisms of these variants.We conducted functional splicing assays using a hybrid minigene for six suspected splicing variants (c.105GA, c.105+5GC, c.106-17TG, c.393+4AG, c.517-8AG, c.517-3CA) in CLCN5. We extracted information on these variants from the Human Gene Mutation Database. We reproduced minigene vectors with the insertion of relevant exons with suspected splicing variants. We then transfected these minigene vectors into cultured cells and extracted and analyzed the mRNA. In addition, we conducted in silico analysis to confirm our minigene assay results.We successfully determined that five of these six variants are pathogenic via the production of splicing abnormalities. One showed only normal transcript production and was thus suspected of not being pathogenic (c.106-17TG).We found that five CLCN5 variants disrupted the original splice site, resulting in aberrant splicing. It is sometimes difficult to obtain mRNA from patient samples because of the fragility of mRNA or its low expression level in peripheral leukocytes. Our in vitro system can be used as an alternative to in vivo assays to determine the pathogenicity of suspected splicing variants.
- Subjects :
- Nephrology
medicine.medical_specialty
Physiology
DNA, Recombinant
MEDLINE
Dent Disease
Nephrolithiasis
Bioinformatics
CLCN5 gene
Chloride Channels
Physiology (medical)
Internal medicine
Databases, Genetic
medicine
Humans
Computer Simulation
RNA, Messenger
business.industry
Correction
Genetic Diseases, X-Linked
HEK293 Cells
Mutation
RNA splicing
business
Functional analysis (psychology)
HeLa Cells
Subjects
Details
- ISSN :
- 14377799 and 13421751
- Volume :
- 25
- Database :
- OpenAIRE
- Journal :
- Clinical and Experimental Nephrology
- Accession number :
- edsair.doi.dedup.....d1739ca77ffddae8bfe108fb4729180e
- Full Text :
- https://doi.org/10.1007/s10157-021-02041-8