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Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Authors :
Philippe Oger
Emmanuelle Morin
Pascale Frey-Klett
Stéphane Uroz
Interactions Arbres-Microorganismes (IAM)
Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL)
Unité de recherche Biogéochimie des Ecosystèmes Forestiers (BEF)
Institut National de la Recherche Agronomique (INRA)
Laboratoire de Sciences de la Terre (LST)
École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)
Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)
Pat Schloss's bioinformatics platform
Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA)
Source :
Applied and Environmental Microbiology, Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩, Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (8), pp.3020-3024. ⟨10.1128/AEM.06742-11⟩, Applied and Environmental Microbiology, 2012, 78 (8), pp.3020-3024. ⟨10.1128/AEM.06742-11⟩
Publication Year :
2012
Publisher :
HAL CCSD, 2012.

Abstract

Analysis of the 16S rRNA gene sequences generated from Xerocomus pruinatus and Scleroderma citrinum ectomycorrhizospheres revealed that similar bacterial communities inhabited the two ectomycorrhizospheres in terms of phyla and genera, with an enrichment of the Burkholderia genus. Compared to the bulk soil habitat, ectomycorrhizospheres hosted significantly more Alpha -, Beta -, and Gammaproteobacteria .

Subjects

Subjects :
DNA, Bacterial
[SDV]Life Sciences [q-bio]
Molecular Sequence Data
MYCORRHIZOSPHERE
FLUORESCENT PSEUDOMONADS
DNA, Ribosomal
Applied Microbiology and Biotechnology
Microbial Ecology
03 medical and health sciences
FUNCTIONAL DIVERSITY
GENUS
Phylogenetics
Mycorrhizae
RNA, Ribosomal, 16S
Gammaproteobacteria
Botany
Cluster Analysis
SUILLUS-BOVINUS
Phylogeny
Soil Microbiology
SOIL BACTERIAL
ComputingMilieux_MISCELLANEOUS
030304 developmental biology
Genetics
0303 health sciences
Bacteria
Ecology
biology
030306 microbiology
Phylum
Basidiomycota
RHIZOSPHERE
FUNGI
PINUS-SYLVESTRIS
Biodiversity
Sequence Analysis, DNA
15. Life on land
16S ribosomal RNA
biology.organism_classification
Burkholderia
Pyrosequencing
Scleroderma citrinum
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
Soil microbiology
Food Science
Biotechnology

Details

Language :
English
ISSN :
00992240 and 10985336
Database :
OpenAIRE
Journal :
Applied and Environmental Microbiology, Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩, Applied and Environmental Microbiology, American Society for Microbiology, 2012, 78 (8), pp.3020-3024. ⟨10.1128/AEM.06742-11⟩, Applied and Environmental Microbiology, 2012, 78 (8), pp.3020-3024. ⟨10.1128/AEM.06742-11⟩
Accession number :
edsair.doi.dedup.....d15606352408b2a04bb15a4aa85fd955
Full Text :
https://doi.org/10.1128/AEM.06742-11⟩
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