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Fast index for approximate string matching
- Source :
- Journal of Discrete Algorithms. 8(4):339-345
- Publication Year :
- 2010
- Publisher :
- Elsevier BV, 2010.
-
Abstract
- We present an index that stores a text of length n such that given a pattern of length m, all the substrings of the text that are within Hamming distance (or edit distance) at most k from the pattern are reported in O(m+loglogn+#matches) time (for constant k). The space complexity of the index is O(n1+ϵ) for any constant ϵ>0.
- Subjects :
- Theoretical computer science
Bitap algorithm
Hamming distance
Text indexing
Approximate string matching
Space (mathematics)
Substring
Theoretical Computer Science
Combinatorics
Computational Theory and Mathematics
Approximate pattern matching
Discrete Mathematics and Combinatorics
Edit distance
Hamming weight
Constant (mathematics)
Mathematics
Subjects
Details
- ISSN :
- 15708667
- Volume :
- 8
- Issue :
- 4
- Database :
- OpenAIRE
- Journal :
- Journal of Discrete Algorithms
- Accession number :
- edsair.doi.dedup.....d06481b8dbe4fef0c2d61d2ff8a1ac42
- Full Text :
- https://doi.org/10.1016/j.jda.2010.08.002