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The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

Authors :
Andrew G. Cridge
Arjuna Rajakumar
Emily C. Jennings
Yi Han
Cédric Finet
Elizabeth J. Duncan
Hsu Chao
Richard A. Gibbs
Li Mei Chiang
Seung-Joon Ahn
Abderrahman Khila
Joshua B. Benoit
Chris Jacobs
Sandra L. Lee
Kim C. Worley
Antonin J.J. Crumière
Markus Friedrich
Séverine Viala
Rajendhran Rajakumar
Andrew J. Rosendale
Harshavardhan Doddapaneni
Maryna P. Lesoway
Travis Chen
Aidamalia Vargas Lowman
Alys M. Cheatle Jarvela
Mackenzie Lovegrove
Daniel S.T. Hughes
Jeffery W. Jones
Shwetha C. Murali
Christopher P. Childers
Donna M. Muzny
Monica Munoz-Torres
Iris M. Vargas Jentzsch
Brenda Oppert
Huyen Dinh
David Armisén
Marie-Julie Favé
Elise M. Didion
Stephen Richards
François Bonneton
William Toubiana
Elena N. Elpidina
Amélie Decaras
Peter N Refki
Monica F. Poelchau
Shannon Dugan
Angelica Lillico-Ouachour
Maria Emilia Santos
Kristen A. Panfilio
Ehab Abouheif
Hugh M. Robertson
Maurijn van der Zee
Alexander G. Martynov
Jiaxin Qu
Génétique Diversité et Ecophysiologie des Céréales (GDEC)
Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])
Max Planck Institute for Chemical Ecology
Max-Planck-Gesellschaft
Georgetown University [Washington] (GU)
Human Genome Sequencing Center, Baylor College of Medicine
Baylor College of Medicine (BCM)
Baylor University-Baylor University
Human Genome Sequencing Center [Houston] (HGSC)
Lawrence Berkeley National Laboratory [Berkeley] (LBNL)
Institut de Génomique Fonctionnelle de Lyon (IGFL)
École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
École Pratique des Hautes Études (EPHE)
Université Paris sciences et lettres (PSL)
Reproduction et développement des plantes (RDP)
Clinical Genetics
Guy's and St. Thomas' NHS Foundation Trust
Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon)
École pratique des hautes études (EPHE)
Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon)
Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Institut National de la Recherche Agronomique (INRA)
École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL)
Apollo - University of Cambridge Repository
Source :
BMC Genomics, BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, 19, 832, BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
Publication Year :
2018

Abstract

Background Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group. Results Here we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000 Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats. Conclusions Our findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders. Electronic supplementary material The online version of this article (10.1186/s12864-018-5163-2) contains supplementary material, which is available to authorized users.

Details

Language :
English
ISSN :
14712164
Database :
OpenAIRE
Journal :
BMC Genomics, BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, 19, 832, BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
Accession number :
edsair.doi.dedup.....ca961ec0adf04228f96aa2730bfddec8
Full Text :
https://doi.org/10.1186/s12864-018-5163-2