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The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water
- Source :
- BMC Genomics, BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, 19, 832, BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
- Publication Year :
- 2018
-
Abstract
- Background Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group. Results Here we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000 Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats. Conclusions Our findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders. Electronic supplementary material The online version of this article (10.1186/s12864-018-5163-2) contains supplementary material, which is available to authorized users.
- Subjects :
- 0106 biological sciences
Genome evolution
lcsh:QH426-470
Evolution
lcsh:Biotechnology
[SDV]Life Sciences [q-bio]
Genomics
Biology
010603 evolutionary biology
01 natural sciences
Genome
Evolution, Molecular
Heteroptera
03 medical and health sciences
lcsh:TP248.13-248.65
Gene family
Animals
14. Life underwater
Epigenetics
Adaptation
Gene
QH426
Phylogeny
ComputingMilieux_MISCELLANEOUS
030304 developmental biology
0303 health sciences
QL
[SDV.GEN]Life Sciences [q-bio]/Genetics
Water striders
Adaptation, Physiological
lcsh:Genetics
Phenotype
Evolutionary biology
Genome sequence
Insect Proteins
Evolutionary ecology
Water surface locomotion
Research Article
Subjects
Details
- Language :
- English
- ISSN :
- 14712164
- Database :
- OpenAIRE
- Journal :
- BMC Genomics, BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5163-2⟩, BMC Genomics, 19, 832, BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
- Accession number :
- edsair.doi.dedup.....ca961ec0adf04228f96aa2730bfddec8
- Full Text :
- https://doi.org/10.1186/s12864-018-5163-2