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Reassessment of the phylogenetic relationships of Thiomonas cuprina
- Source :
- International Journal of Systematic and Evolutionary Microbiology. 57:2720-2724
- Publication Year :
- 2007
- Publisher :
- Microbiology Society, 2007.
-
Abstract
- The published sequence of the 16S rRNA gene of Thiomonas cuprina strain Hö5 (=DSM 5495T) (GenBank accession no. U67162) was found to be erroneous. The 16S rRNA genes from the type strain held by the DSMZ since 1990 (DSM 5495T =NBRC 102145T) and strain Hö5 maintained frozen in the Universität Regensburg for 23 years (=NBRC 102094) were sequenced and found to be identical, but to show no significant similarity to the U67162 sequence. This also casts some doubt on the previously published 5S and 23S rRNA gene sequences (GenBank accession nos U67171 and X75567). The correct 16S rRNA gene sequence showed 99.8 % identity to those from Thiomonas delicata NBRC 14566T and ‘Thiomonas arsenivorans’ DSM 16361. The properties of these three species are re-evaluated, and emended descriptions are provided for the genus Thiomonas and the species Thiomonas cuprina.
- Subjects :
- DNA, Bacterial
Genetics
Phylogenetic tree
Molecular Sequence Data
Betaproteobacteria
Genes, rRNA
Sequence Analysis, DNA
General Medicine
Biology
16S ribosomal RNA
biology.organism_classification
DNA, Ribosomal
Microbiology
Species Specificity
Thiomonas cuprina
Phylogenetics
23S ribosomal RNA
RNA, Ribosomal, 16S
GenBank
Gene
Thiomonas delicata
Phylogeny
Ecology, Evolution, Behavior and Systematics
Subjects
Details
- ISSN :
- 14665034 and 14665026
- Volume :
- 57
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology
- Accession number :
- edsair.doi.dedup.....c944d0a808ab4a3a24812a416280354d