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Sequence and comparison of mitochondrial genomes in the genus Nerita (Gastropoda: Neritimorpha: Neritidae) and phylogenetic considerations among gastropods
- Source :
- Marine Genomics. 15:45-54
- Publication Year :
- 2014
- Publisher :
- Elsevier BV, 2014.
-
Abstract
- In the present study, we determined the mitochondrial DNA (mtDNA) sequence of three Neritas, Nerita versicolor, Nerita tessellata, and Nerita fulgurans. We present an analysis of the features of their gene content and genome organization and compare these within the genus Nerita, and among the main gastropod groups. The new sequences were used in a phylogenetic analysis including all available gastropod mitochondrial genomes. Genomic lengths were quite conserved, being 15,866bp for N. versicolor, 15,741bp for N. tessellata and 15,343bp for N. fulgurans. Intergenic regions were generally short; genes are transcribed from both strands and have a nucleotide composition high in A and T. The high similarity in nucleotide content of the different sequences, gene composition, as well as an identical genomic organization among the Nerita species compared in this study, indicates a high degree of conservation within this diverse genus. Values of Ka/Ks of the 13 protein coding genes (PCGs) of Nerita species ranged from 0 to 0.18, and suggested different selection pressures in gene sequences. Bayesian phylogenetic analyses using concatenated DNA sequences of the 13 PCGs and the two rRNAs, and of amino acid sequences strongly supported Neritimorpha and Vetigastropoda as sister groups.
- Subjects :
- Neritimorpha
Gastropoda
Molecular Sequence Data
Aquatic Science
Intergenic region
Species Specificity
Phylogenetics
Nerita
Gene Order
Genetics
Animals
Amino Acid Sequence
Phylogeny
DNA Primers
Genomic organization
Base Composition
Base Sequence
Models, Genetic
Phylogenetic tree
biology
Bayes Theorem
Molecular Sequence Annotation
Sequence Analysis, DNA
biology.organism_classification
Nerita tessellata
Genome, Mitochondrial
Nerita versicolor
Sequence Alignment
Subjects
Details
- ISSN :
- 18747787
- Volume :
- 15
- Database :
- OpenAIRE
- Journal :
- Marine Genomics
- Accession number :
- edsair.doi.dedup.....c8314628985ba4a07904faf6aa81a097
- Full Text :
- https://doi.org/10.1016/j.margen.2014.04.007