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Ant Colony Approach to Predict Amino Acid Interaction Networks
- Source :
- Proceedings of NaBIC, World Congress on Nature & Biologically Inspired Computing, World Congress on Nature & Biologically Inspired Computing, Dec 2009, Coimbatore, India. pp.1725-1730, NaBIC
- Publication Year :
- 2009
- Publisher :
- HAL CCSD, 2009.
-
Abstract
- International audience; In this paper we introduce the notion of protein interaction network. This is a graph whose vertices are the proteins amino acids and whose edges are the interactions between them. We consider the problem of reconstructing protein's interaction network from its amino acid sequence. An ant colony approach is used to solve this problem.
- Subjects :
- Computer science
interaction network
MathematicsofComputing_NUMERICALANALYSIS
Computational biology
Bioinformatics
03 medical and health sciences
0302 clinical medicine
Protein structure
Interaction network
TheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITY
protein structure
Hidden Markov model
Peptide sequence
030304 developmental biology
[INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]
chemistry.chemical_classification
0303 health sciences
[SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Ant colony
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Graph
Amino acid
ComputingMethodologies_PATTERNRECOGNITION
chemistry
ant algorithm
[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]
030217 neurology & neurosurgery
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Proceedings of NaBIC, World Congress on Nature & Biologically Inspired Computing, World Congress on Nature & Biologically Inspired Computing, Dec 2009, Coimbatore, India. pp.1725-1730, NaBIC
- Accession number :
- edsair.doi.dedup.....c81f6cc0a5a29c653ebf8131fed5ece5