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A molecular-based identification resource for the arthropods of Finland

Authors :
Aino Juslén
Petri Metsälä
Dina Soliman
Susana Miranda Romo
Ika Österblad
Petri Lampila
Timo Pajunen
Janne Koskinen
Erkki M. Laasonen
Kate Perez
Santiago Blanco
Vladislav Ivanov
Leif Schulman
Sami Haapala
Aki Rinne
Ritva Penttinen
Jari-Pekka Kaitila
Jukka Salmela
Jostein Kjærandsen
Nadia Nikolova
Petri Parkko
Catherine Wei
Martti Raekunnas
Petri Ahlroth
Pekka Raukko
Juho Paukkunen
Mikko Pentinsaari
Ari Kakko
Claudia Steinke
Valerie Levesque-Beaudin
Arto Muinonen
Teemu Rintala
Petri Martikainen
Jussi Vilen
Eero J. Vesterinen
Renee Miskie
Tomas Roslin
Lauri Kaila
Jouni Aspi
Pasi Sihvonen
Riikka Elo
Esko Viitanen
Veli Vikberg
Gergely Várkonyi
Chris Ho
Margarita Miklasevskaja
Leena Laasonen
Riitta Savolainen
Jevgeni Jakovlev
Suresh Naik
Sampsa Malmberg
Kari Nupponen
Gunilla Ståhls
Liuqiong Lu
Eero Helve
Meeri Rannisto
Reijo Jussila
Dean Chan
Jari Ilmonen
Sean Prosser
Jeremy R deWaard
Meredith Miller
Meri Lähteenaro
Jayme E Sones
Jaakko Pohjoismäki
Pekka Majuri
Tom Clayhills
Lauri Paasivirta
Sujeevan Ratnasingham
Perttu Anttonen
Connor P Warne
Juha Salokannel
Jaclyn McKeown
Veli-Matti Mukkala
Erkka Laine
Juhani Itämies
Sami Karjalainen
Otso Ovaskainen
Kaj Winqvist
Paul D. N. Hebert
Miduna Rahulan
Tyler Elliot
Jere Kahanpää
Ali Karhu
Panu Somervuo
Matti Viitasaari
Marko Mutanen
Petri Hirvonen
Jukka Tabell
Stephanie L. deWaard
Evgeny Zakharov
Mikko Tiusanen
Iiro Kakko
Gergin Blagoev
Ramya Manjunath
Jireh Agda
Jaakko Mattila
Department of Agricultural Sciences
Spatial Foodweb Ecology Group
Organismal and Evolutionary Biology Research Programme
Zoology
Finnish Museum of Natural History
Unit of Biodiversity Informatics
Lauri Kaila / Principal Investigator
Otso Ovaskainen / Principal Investigator
Source :
Molecular Ecology Resources
Publication Year :
2022
Publisher :
John Wiley & Sons, 2022.

Abstract

Publisher Copyright: © 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd. To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi) at https://laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.

Details

Language :
English
Database :
OpenAIRE
Journal :
Molecular Ecology Resources
Accession number :
edsair.doi.dedup.....c611a324c805fff85f3b9c11177a149f