Back to Search
Start Over
Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues
- Source :
- Biochemistry. 57:5797-5806
- Publication Year :
- 2018
- Publisher :
- American Chemical Society (ACS), 2018.
-
Abstract
- Sugar cane defensin 5 (Sd5) is a small antifungal protein, whose structure is held together by four conserved disulfide bridges. Sd5 and other proteins sharing a cysteine-stabilized α-β (CSαβ) fold lack a regular hydrophobic core. Instead, they are stabilized by tertiary contacts formed by surface-exposed hydrophilic and hydrophobic residues. Despite excessive cross-links, Sd5 exhibits complex millisecond conformational dynamics involving all secondary structure elements. We used Carr-Purcell-Meiboom-Gill (CPMG) NMR relaxation dispersion (RD) measurements performed at different temperatures and denaturant concentrations to probe brief excursions of Sd5 to a sparsely populated "excited" state. Temperature-dependent CPMG RD experiments reveal that the excited state is enthalpically unfavorable, suggesting a rearrangement of stabilizing contacts formed by surface-exposed side chains and/or secondary structure, while the experiments performed at different denaturant concentrations suggest a decrease in accessible surface area of Sd5 in the excited state. The measured backbone
- Subjects :
- 0301 basic medicine
Protein Folding
Stereochemistry
Chemistry
Plant defensin
Sugar cane
Peas
Disulfide bond
Molecular Dynamics Simulation
Biochemistry
Protein Structure, Secondary
Defensins
Evolution, Molecular
03 medical and health sciences
030104 developmental biology
Protein Domains
Antifungal protein
Cysteine
Defensin
Plant Proteins
Subjects
Details
- ISSN :
- 15204995 and 00062960
- Volume :
- 57
- Database :
- OpenAIRE
- Journal :
- Biochemistry
- Accession number :
- edsair.doi.dedup.....c1310a3e84b5b824b7d469a806a3d91a
- Full Text :
- https://doi.org/10.1021/acs.biochem.8b00753