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Conformational Dynamics of a Cysteine-Stabilized Plant Defensin Reveals an Evolutionary Mechanism to Expose Hydrophobic Residues

Authors :
Yulia Pustovalova
Irina Bezsonova
Fabio C. L. Almeida
Dmitry M. Korzhnev
Luciana Ferreira Machado
Ana Paula Valente
Viviane S. De Paula
Source :
Biochemistry. 57:5797-5806
Publication Year :
2018
Publisher :
American Chemical Society (ACS), 2018.

Abstract

Sugar cane defensin 5 (Sd5) is a small antifungal protein, whose structure is held together by four conserved disulfide bridges. Sd5 and other proteins sharing a cysteine-stabilized α-β (CSαβ) fold lack a regular hydrophobic core. Instead, they are stabilized by tertiary contacts formed by surface-exposed hydrophilic and hydrophobic residues. Despite excessive cross-links, Sd5 exhibits complex millisecond conformational dynamics involving all secondary structure elements. We used Carr-Purcell-Meiboom-Gill (CPMG) NMR relaxation dispersion (RD) measurements performed at different temperatures and denaturant concentrations to probe brief excursions of Sd5 to a sparsely populated "excited" state. Temperature-dependent CPMG RD experiments reveal that the excited state is enthalpically unfavorable, suggesting a rearrangement of stabilizing contacts formed by surface-exposed side chains and/or secondary structure, while the experiments performed at different denaturant concentrations suggest a decrease in accessible surface area of Sd5 in the excited state. The measured backbone

Details

ISSN :
15204995 and 00062960
Volume :
57
Database :
OpenAIRE
Journal :
Biochemistry
Accession number :
edsair.doi.dedup.....c1310a3e84b5b824b7d469a806a3d91a
Full Text :
https://doi.org/10.1021/acs.biochem.8b00753