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Isolation and Characterization of Microsatellite Loci in the Chinese Cobra Naja atra (Elapidae)
- Source :
- International Journal of Molecular Sciences, International Journal of Molecular Sciences; Volume 12; Issue 7; Pages: 4435-4440, International Journal of Molecular Sciences, Vol 12, Iss 7, Pp 4435-4440 (2011)
- Publication Year :
- 2011
- Publisher :
- Molecular Diversity Preservation International (MDPI), 2011.
-
Abstract
- We characterize thirteen polymorphic microsatellite loci isolated from Naja atra genomic libraries, which were enriched for AC-motif microsatellites. The thirteen loci were screened on a group of 48 individuals from two populations, one in Yong’an and the other in Ganzhou. These markers revealed a relatively high degree of genetic diversity (4–12 alleles per locus) and heterozygosity (Ho ranged from 0.213–0.854 and He ranged from 0.301–0.838). Tests for departure from Hardy-Weinberg equilibrium and for linkage disequilibrium were conducted for each of the two populations separately. After sequential Bonferroni correction, none of the 13 loci showed significant departures from Hardy-Weinberg equilibrium. Hierarchical analysis of molecular variance indicated that a small but significant (P < 0.001) proportion (16.0%) of the total variation in the microsatellite DNA data were attributable to differences among populations, indicating geographical structuring and restricted gene flow. It could be attributable to the Wuyi mountains in the area having a sufficiently isolating effect to significantly reduce gene flow. Our microsatellite data also showed a low Nm (1.31) value in the two populations from mainland China. Thus, the Yong’an and Ganzhou populations could be treated as distinct evolutionarily significant units (ESUs). The high level of polymorphism revealed by these microsatellite markers will be useful for the study of gene flow, population structure and evolutionary history of N. atra.
- Subjects :
- Linkage disequilibrium
China
PCR primers
Naja atra
Elapidae
microsatellites
polymorphism
Locus (genetics)
Biology
Catalysis
Article
Linkage Disequilibrium
Gene flow
lcsh:Chemistry
Inorganic Chemistry
Loss of heterozygosity
Genetic variation
Animals
Humans
Physical and Theoretical Chemistry
Allele
lcsh:QH301-705.5
Molecular Biology
Spectroscopy
Alleles
Genetics
Genetic diversity
Organic Chemistry
Genetic Variation
General Medicine
Computer Science Applications
lcsh:Biology (General)
lcsh:QD1-999
Genetic Loci
Microsatellite
Microsatellite Repeats
Subjects
Details
- Language :
- English
- ISSN :
- 14220067
- Volume :
- 12
- Issue :
- 7
- Database :
- OpenAIRE
- Journal :
- International Journal of Molecular Sciences
- Accession number :
- edsair.doi.dedup.....c02871ca31dc6889f4d4c829ad418528