Back to Search
Start Over
PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways
- Source :
- Bioinformatics. 29:1465-1466
- Publication Year :
- 2013
- Publisher :
- Oxford University Press (OUP), 2013.
-
Abstract
- Purpose: The PathVisio-Faceted Search plugin helps users explore and understand complex pathways by overlaying experimental data and data from webservices, such as Ensembl BioMart, onto diagrams drawn using formalized notations in PathVisio. The plugin then provides a filtering mechanism, known as a faceted search, to find and highlight diagram nodes (e.g. genes and proteins) of interest based on imported data. The tool additionally provides a flexible scripting mechanism to handle complex queries. Availability: The PathVisio-Faceted Search plugin is compatible with PathVisio 3.0 and above. PathVisio is compatible with Windows, Mac OS X and Linux. The plugin, documentation, example diagrams and Groovy scripts are available at http://PathVisio.org/wiki/PathVisioFacetedSearchHelp. The plugin is free, open-source and licensed by the Apache 2.0 License. Contact:augustin@mail.nih.gov or jakeyfried@gmail.com
- Subjects :
- Statistics and Probability
Lymphoma
Computer science
computer.software_genre
Models, Biological
Biochemistry
World Wide Web
User-Computer Interface
Documentation
Software
Humans
Ensembl
Plug-in
Molecular Biology
business.industry
Programming language
Systems Biology
Proteins
Applications Notes
Computer Science Applications
Computational Mathematics
Genes
Computational Theory and Mathematics
Scripting language
Faceted search
OS X
Web service
business
computer
Subjects
Details
- ISSN :
- 14602059 and 13674803
- Volume :
- 29
- Database :
- OpenAIRE
- Journal :
- Bioinformatics
- Accession number :
- edsair.doi.dedup.....bffa9e03091b5db62020a619cde15fd7