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BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser
- Source :
- Nucleic Acids Research
- Publication Year :
- 2005
- Publisher :
- Oxford University Press (OUP), 2005.
-
Abstract
- The growing amount of information resulting from the increasing number of publicly available genomes and experimental results thereof necessitates the development of comprehensive systems for data processing and analysis. In this paper, we describe the current state and latest developments of our BRIGEP bioinformatics software system consisting of three web-based applications: GenDB, EMMA and ProDB. These applications facilitate the processing and analysis of bacterial genome, transcriptome and proteome data and are actively used by numerous international groups. We are currently in the process of extensively interconnecting these applications. BRIGEP was developed in the Bioinformatics Resource Facility of the Center for Biotechnology at Bielefeld University and is freely available. A demo project with sample data and access to all three tools is available at https://www.cebitec.uni-bielefeld.de/groups/brf/software/brigep/. Code bundles for these and other tools developed in our group are accessible on our FTP server at ftp.cebitec.uni-bielefeld.de/pub/software/.
- Subjects :
- Proteomics
File Transfer Protocol
Transcription, Genetic
Genomics
Bacterial genome size
Biology
Bioinformatics
Genome
Article
World Wide Web
User-Computer Interface
Software
Bacterial Proteins
Databases, Genetic
Genetics
Internet
business.industry
Systems Integration
RNA, Bacterial
System integration
The Internet
Transcription (software)
business
Genome, Bacterial
Sinorhizobium meliloti
Subjects
Details
- ISSN :
- 13624962 and 03051048
- Volume :
- 33
- Database :
- OpenAIRE
- Journal :
- Nucleic Acids Research
- Accession number :
- edsair.doi.dedup.....bf5efb8d1ed990973805e17e87d78ec0