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A microRNA disease signature associated with lymph node metastasis of lung adenocarcinoma
- Source :
- Mathematical Biosciences and Engineering, Vol 17, Iss 3, Pp 2557-2568 (2020)
- Publication Year :
- 2020
-
Abstract
- Background: Lymph node metastasis (LNM) of lung cancer is an important factor associated with prognosis. Dysregulated microRNAs (miRNAs) are becoming a new powerful tool to characterize tumorigenesis and metastasis. We have developed and validated a miRNA disease signature to predict LNM in lung adenocarcinoma (LUAD). Method: LUAD miRNAs and clinical data from The Cancer Genome Atlas (TCGA) were obtained and divided randomly into training (n = 259) and validation (n = 83) cohorts. A miRNA signature was built using least absolute shrinkage and selection operator (LASSO) (λ = -1.268) and logistic regression model. The performance of the miRNA signature was evaluated using the area under curve (AUC) of receiver operating characteristic curve (ROC). We performed decision curve analysis (DCA) to assess the clinical usefulness of the signature. We also conducted a miRNA-regulatory network analysis to look for potential genes engaged in LNM in LUAD. Result: Thirteen miRNAs were selected to build our miRNA disease signature. The model showed good calibration in the training cohort, with an AUC of 0.782 (95% CI: 0.725-0.839). In the validation cohort, AUC was 0.691 (95% CI: 0.575-0.806). DCA demonstrated that the miRNA signature was clinically useful. Conclusion: The miRNA disease signature can be used as a noninvasive method to predict LNM in patients with lung adenocarcinoma objectively and the signature achieved high accuracy for prediction.
- Subjects :
- Oncology
medicine.medical_specialty
Lung Neoplasms
microrna
Adenocarcinoma of Lung
02 engineering and technology
Disease
Logistic regression
Metastasis
Internal medicine
0502 economics and business
microRNA
QA1-939
0202 electrical engineering, electronic engineering, information engineering
medicine
Humans
tcga
Lung cancer
Lung
lymph node metastasis
disease signature
Receiver operating characteristic
business.industry
Applied Mathematics
05 social sciences
General Medicine
lung adenocarcinoma
medicine.disease
Computational Mathematics
MicroRNAs
medicine.anatomical_structure
ROC Curve
Modeling and Simulation
Lymphatic Metastasis
Adenocarcinoma
020201 artificial intelligence & image processing
General Agricultural and Biological Sciences
business
TP248.13-248.65
Mathematics
050203 business & management
Biotechnology
Subjects
Details
- ISSN :
- 15510018
- Volume :
- 17
- Issue :
- 3
- Database :
- OpenAIRE
- Journal :
- Mathematical biosciences and engineering : MBE
- Accession number :
- edsair.doi.dedup.....be2849529d241bf965903fc6c13d772f