Back to Search
Start Over
Development and Validation of a Novel 11-Gene Prognostic Model for Serous Ovarian Carcinomas Based on Lipid Metabolism Expression Profile
- Source :
- International Journal of Molecular Sciences, Vol 21, Iss 9169, p 9169 (2020), International Journal of Molecular Sciences, Volume 21, Issue 23
- Publication Year :
- 2020
- Publisher :
- MDPI AG, 2020.
-
Abstract
- (1) Background: Biomarkers might play a significant role in predicting the clinical outcomes of patients with ovarian cancer. By analyzing lipid metabolism genes, future perspectives may be uncovered<br />(2) Methods: RNA-seq data for serous ovarian cancer were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. The non-negative matrix factorization package in programming language R was used to classify molecular subtypes of lipid metabolism genes and the limma package in R was performed for functional enrichment analysis. Through lasso regression, we constructed a multi-gene prognosis model<br />(3) Results: Two molecular subtypes were obtained and an 11-gene signature was constructed (PI3, RGS, ADORA3, CH25H, CCDC80, PTGER3, MATK, KLRB1, CCL19, CXCL9 and CXCL10). Our prognostic model shows a good independent prognostic ability in ovarian cancer. In a nomogram, the predictive efficiency was notably superior to that of traditional clinical features. Related to known models in ovarian cancer with a comparable amount of genes, ours has the highest concordance index<br />(4) Conclusions: We propose an 11-gene signature prognosis prediction model based on lipid metabolism genes in serous ovarian cancer.
- Subjects :
- 0301 basic medicine
Oncology
Kaplan-Meier Estimate
lcsh:Chemistry
0302 clinical medicine
Databases, Genetic
lipid metabolism
Gene Regulatory Networks
genes
lcsh:QH301-705.5
Spectroscopy
The Cancer Genome Atlas (TCGA)
General Medicine
ovarian neoplasms
Prognosis
Computer Science Applications
Gene Expression Regulation, Neoplastic
KLRB1
Serous fluid
030220 oncology & carcinogenesis
CXCL9
Female
Disease Susceptibility
medicine.medical_specialty
Biology
Catalysis
Article
Inorganic Chemistry
03 medical and health sciences
Internal medicine
medicine
Biomarkers, Tumor
Humans
ddc:610
Physical and Theoretical Chemistry
Molecular Biology
Gene
Gene Expression Profiling
Organic Chemistry
Computational Biology
Lipid metabolism
Nomogram
medicine.disease
Cystadenocarcinoma, Serous
030104 developmental biology
ROC Curve
Gene Expression Omnibus (GEO)
lcsh:Biology (General)
lcsh:QD1-999
Prognostic model
Ovarian cancer
Transcriptome
Subjects
Details
- Language :
- English
- ISSN :
- 16616596 and 14220067
- Volume :
- 21
- Issue :
- 9169
- Database :
- OpenAIRE
- Journal :
- International Journal of Molecular Sciences
- Accession number :
- edsair.doi.dedup.....be105c97dad38447eda30dba46d9ef5b