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CerealsDB—new tools for the analysis of the wheat genome:update 2020
- Source :
- Wilkinson, P A, Allen, A M, Tyrrell, S, Wingen, L U, Bian, X, Winfield, M O, Burridge, A, Shaw, D S, Zaucha, J, Griffiths, S, Davey, R P, Edwards, K J & Barker, G L A 2020, ' CerealsDB—new tools for the analysis of the wheat genome : update 2020 ', Database, vol. 2020, baaa060 . https://doi.org/10.1093/database/baaa060, Database: The Journal of Biological Databases and Curation, Database: the journal of biological databases and curation
- Publication Year :
- 2020
-
Abstract
- CerealsDB (www.cerealsdb.uk.net) is an online repository of mainly hexaploid wheat (Triticum aestivum) single nucleotide polymorphisms (SNPs) and genotyping data. The CerealsDB website has been designed to enable wheat breeders and scientists to select the appropriate markers for research breeding tasks, such as marker-assisted selection. We report a large update of genotyping information for over 6000 wheat accessions and describe new webtools for exploring and visualizing the data. We also describe a new database of quantitative trait loci that links phenotypic traits to CerealsDB SNP markers and allelic scores for each of those markers. CerealsDB is an open-access website that hosts information on wheat SNPs considered useful for both plant breeders and research scientists. The latest CerealsDB database is available at https://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php.
- Subjects :
- 0106 biological sciences
Edible Grain/genetics
Quantitative Trait Loci
Single-nucleotide polymorphism
Computational biology
Biology
Quantitative trait locus
Breeding
Polymorphism, Single Nucleotide
01 natural sciences
Genome
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
Snp markers
Databases, Genetic
Allele
Genotyping
Triticum
Selection (genetic algorithm)
030304 developmental biology
0303 health sciences
food and beverages
Phenotypic trait
Polymorphism, Single Nucleotide/genetics
Genome, Plant/genetics
Database Update
Triticum/genetics
AcademicSubjects/SCI00960
Edible Grain
General Agricultural and Biological Sciences
Quantitative Trait Loci/genetics
Genome, Plant
Software
010606 plant biology & botany
Information Systems
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Journal :
- Wilkinson, P A, Allen, A M, Tyrrell, S, Wingen, L U, Bian, X, Winfield, M O, Burridge, A, Shaw, D S, Zaucha, J, Griffiths, S, Davey, R P, Edwards, K J & Barker, G L A 2020, ' CerealsDB—new tools for the analysis of the wheat genome : update 2020 ', Database, vol. 2020, baaa060 . https://doi.org/10.1093/database/baaa060, Database: The Journal of Biological Databases and Curation, Database: the journal of biological databases and curation
- Accession number :
- edsair.doi.dedup.....bbb17754572b858fe8e71e93481d80f6