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Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries

Authors :
Gharahkhani, Puya
Jorgenson, Eric
Hysi, Pirro
Khawaja, Anthony P
Pendergrass, Sarah
Han, Xikun
Ong, Jue Sheng
Hewitt, Alex W
Segrè, Ayellet V
Rouhana, John M
Hamel, Andrew R
Igo, Robert P
Choquet, Helene
Qassim, Ayub
Josyula, Navya S
Cooke Bailey, Jessica N
Bonnemaijer, Pieter WM
Iglesias, Adriana
Siggs, Owen M
Young, Terri L
Vitart, Veronique
Thiadens, Alberta AHJ
Karjalainen, Juha
Uebe, Steffen
Melles, Ronald B
Nair, K Saidas
Luben, Robert
Simcoe, Mark
Amersinghe, Nishani
Cree, Angela J
Hohn, Rene
Poplawski, Alicia
Chen, Li Jia
Rong, Shi-Song
Aung, Tin
Vithana, Eranga Nishanthie
NEIGHBORHOOD consortium
ANZRAG consortium
Biobank Japan project
FinnGen study
UK Biobank Eye and Vision Consortium
GIGA study group
23 and Me Research Team
Tamiya, Gen
Shiga, Yukihiro
Yamamoto, Masayuki
Nakazawa, Toru
Currant, Hannah
Birney, Ewan
Wang, Xin
Auton, Adam
Lupton, Michelle K
Martin, Nicholas G
Ashaye, Adeyinka
Olawoye, Olusola
Williams, Susan E
Akafo, Stephen
Ramsay, Michele
Hashimoto, Kazuki
Kamatani, Yoichiro
Akiyama, Masato
Momozawa, Yukihide
Foster, Paul J
Khaw, Peng T
Morgan, James E
Strouthidis, Nicholas G
Kraft, Peter
Kang, Jae H
Pang, Chi Pui
Pasutto, Francesca
Mitchell, Paul
Lotery, Andrew J
Palotie, Aarno
van Duijn, Cornelia
Haines, Jonathan L
Hammond, Chris
Pasquale, Louis R
Klaver, Caroline CW
Hauser, Michael
Khor, Chiea Chuen
Mackey, David A
Kubo, Michiaki
Cheng, Ching-Yu
Craig, Jamie E
MacGregor, Stuart
Wiggs, Janey L
Epidemiology
Ophthalmology
Clinical Genetics
Gharahkhani, Puya [0000-0002-4203-5952]
Jorgenson, Eric [0000-0002-5829-8191]
Hysi, Pirro [0000-0001-5752-2510]
Khawaja, Anthony P [0000-0001-6802-8585]
Han, Xikun [0000-0002-3823-7308]
Ong, Jue Sheng [0000-0002-6062-710X]
Hewitt, Alex W [0000-0002-5123-5999]
Rouhana, John M [0000-0002-8599-0271]
Igo, Robert P [0000-0002-0024-1993]
Choquet, Helene [0000-0001-9839-8667]
Josyula, Navya S [0000-0003-2782-8812]
Cooke Bailey, Jessica N [0000-0002-4001-8702]
Bonnemaijer, Pieter WM [0000-0001-5154-6765]
Iglesias, Adriana [0000-0001-5532-764X]
Siggs, Owen M [0000-0003-2840-4851]
Young, Terri L [0000-0001-6994-9941]
Vitart, Veronique [0000-0002-4991-3797]
Thiadens, Alberta AHJ [0000-0002-4911-9462]
Luben, Robert [0000-0002-5088-6343]
Simcoe, Mark [0000-0003-2432-0810]
Cree, Angela J [0000-0002-1987-8900]
Poplawski, Alicia [0000-0003-2527-0763]
Rong, Shi-Song [0000-0001-8352-6363]
Vithana, Eranga Nishanthie [0000-0002-8898-0095]
Yamamoto, Masayuki [0000-0002-9073-9436]
Currant, Hannah [0000-0003-2764-6787]
Birney, Ewan [0000-0001-8314-8497]
Wang, Xin [0000-0001-7242-357X]
Martin, Nicholas G [0000-0003-4069-8020]
Olawoye, Olusola [0000-0003-2357-8924]
Williams, Susan E [0000-0002-4479-8638]
Ramsay, Michele [0000-0002-4156-4801]
Kamatani, Yoichiro [0000-0001-8748-5597]
Foster, Paul J [0000-0002-4755-177X]
Khaw, Peng T [0000-0002-8087-2268]
Kraft, Peter [0000-0002-4472-8103]
Kang, Jae H [0000-0003-4812-0557]
Pasutto, Francesca [0000-0002-0026-5362]
Lotery, Andrew J [0000-0001-5541-4305]
Haines, Jonathan L [0000-0002-4351-4728]
Hammond, Chris [0000-0002-3227-2620]
Pasquale, Louis R [0000-0002-5835-3496]
Klaver, Caroline CW [0000-0002-2355-5258]
Khor, Chiea Chuen [0000-0002-1128-4729]
Cheng, Ching-Yu [0000-0003-0655-885X]
MacGregor, Stuart [0000-0001-6731-8142]
Wiggs, Janey L [0000-0003-1890-3278]
Apollo - University of Cambridge Repository
Institute for Molecular Medicine Finland
Helsinki Institute of Life Science HiLIFE
University of Helsinki
Centre of Excellence in Complex Disease Genetics
Aarno Palotie / Principal Investigator
Genomics of Neurological and Neuropsychiatric Disorders
HUSLAB
HUS Helsinki and Uusimaa Hospital District
APH - Mental Health
APH - Methodology
Amsterdam Neuroscience - Neuroinfection & -inflammation
Source :
Nature Communications, 12(1):1258. Nature Publishing Group, NEIGHBORHOOD Consortium, ANZRAG consortium, Biobank Japan project, FinnGen study, UK Biobank Eye and Vision Consortium, GIGA study group & 23 and Me Research Team 2021, ' Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries ', Nature Communications, vol. 12, no. 1, 1258 . https://doi.org/10.1038/s41467-020-20851-4, Nature Communications, Nature communications, vol 12, iss 1, Nature Communications, Vol 12, Iss 1, Pp 1-16 (2021), Nature Communications, 12, Nature Communications, 12, 1
Publication Year :
2021

Abstract

Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates.<br />Primary open-angle glaucoma (POAG) is highly heritable, yet not well understood from a genetic perspective. Here, the authors perform a meta-analysis of genome-wide association studies in 34,179 POAG cases, identifying 44 previously unreported risk loci and mapping effects across multiple ethnicities.

Details

Language :
English
ISSN :
20411723
Database :
OpenAIRE
Journal :
Nature Communications, 12(1):1258. Nature Publishing Group, NEIGHBORHOOD Consortium, ANZRAG consortium, Biobank Japan project, FinnGen study, UK Biobank Eye and Vision Consortium, GIGA study group & 23 and Me Research Team 2021, ' Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries ', Nature Communications, vol. 12, no. 1, 1258 . https://doi.org/10.1038/s41467-020-20851-4, Nature Communications, Nature communications, vol 12, iss 1, Nature Communications, Vol 12, Iss 1, Pp 1-16 (2021), Nature Communications, 12, Nature Communications, 12, 1
Accession number :
edsair.doi.dedup.....bb7d731b3bc4c940606176a1a6a7f6af