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Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020

Authors :
Mélanie Albert
Fawzi Derrar
Sylvie Behillil
Flora Donati
Sylvie van der Werf
Marion Barbet
Andreea Alexandru
Etienne Simon-Loriere
Fabiana Gámbaro
Angela Brisebarre
Maud Vanpeene
Artem Baidaliuk
Meline Bizard
Vincent Enouf
Génomique évolutive des virus à ARN - Evolutionary genomics of RNA viruses
Institut Pasteur [Paris] (IP)
Centre National de Référence des virus des infections respiratoires (dont la grippe) - National Reference Center Virus Influenzae [Paris] (CNR - laboratoire coordonnateur)
Génétique Moléculaire des Virus à ARN - Molecular Genetics of RNA Viruses (GMV-ARN (UMR_3569 / U-Pasteur_2))
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
Plateforme de Microbiologie Mutualisée (PIBnet) - Mutualized Platform for Microbiology (P2M)
National Influenza Center, Viral Respiratory Laboratory [Alger]
This study has received funding from Institut Pasteur, CNRS, Université de Paris, Santé publique France, the French Government's Investissement d'Avenir programme, Laboratoire d'Excellence 'Integrative Biology of Emerging Infectious Diseases' (grant n°ANR-10-LABX-62-IBEID), REACTing (Research & Action Emerging Infectious Diseases), France Génomique (ANR-10-INBS-09-09), IBISA, and the RECOVER project funded by the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 101003589. ESL acknowledges funding from the INCEPTION programme (Investissements d’Avenir grant ANR-16-CONV-0005).
ANR-10-LABX-0062,IBEID,Integrative Biology of Emerging Infectious Diseases(2010)
ANR-10-INBS-0009,France-Génomique,Organisation et montée en puissance d'une Infrastructure Nationale de Génomique(2010)
ANR-16-CONV-0005,INCEPTION,Institut Convergences pour l'étude de l'Emergence des Pathologies au Travers des Individus et des populatiONs(2016)
European Project: 101003589, H2020-SC1-PHE-CORONAVIRUS-2020,RECOVER(2020)
Institut Pasteur [Paris]
Centre National de Référence des virus des infections respiratoires (dont la grippe) - National Reference Center Virus Influenzae [Paris] (CNR)
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)
Source :
Eurosurveillance, Eurosurveillance, 2020, 25 (26), ⟨10.2807/1560-7917.ES.2020.25.26.2001200⟩, Eurosurveillance, European Centre for Disease Prevention and Control, 2020, 25 (26), ⟨10.2807/1560-7917.ES.2020.25.26.2001200⟩
Publication Year :
2020
Publisher :
European Centre for Disease Control and Prevention (ECDC), 2020.

Abstract

International audience; Following SARS-CoV-2 emergence in China, a specific surveillance was implemented in France. Phylogenetic analysis of sequences retrieved through this surveillance suggests that detected initial introductions, involving non-clade G viruses, did not seed local transmission. Nevertheless, identification of clade G variants subsequently circulating in the country, with the earliest from a patient who neither travelled to risk areas nor had contact with travellers, suggests that SARS-CoV-2 might have been present before the first recorded local cases.

Details

ISSN :
15607917 and 1025496X
Volume :
25
Database :
OpenAIRE
Journal :
Eurosurveillance
Accession number :
edsair.doi.dedup.....b89bb167bce1775bedcb7b0d7a40f893